PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05800.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 300aa MW: 32201.4 Da PI: 8.8908

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05800.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1.1e-20	69	129	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ Zmw_sc05800.1.g00040.1.am.mk 69 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 129 58***************99************************************97 PP
2	Wus_type_Homeobox	120.7	6.3e-39	68	130	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ Zmw_sc05800.1.g00040.1.am.mk 68 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 130 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-12	64	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.463	65	130	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	67	134	IPR001356	Homeobox domain
CDD	cd00086	4.29E-4	68	123	No hit	No description
Pfam	PF00046	2.3E-18	70	129	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-7	71	129	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MLTIDILFLF ARVVEGGISE GPIGLWPWCV KLSHAMAPGS AMQIYKRLSQ RGMTVPQGKQ 60 LANMPQTPST RWCPTPEQLM ILEEMYRSGV RTPNAAEIQQ ITAHLAYYGR IEGKNVFYWF 120 QNHKARERQR LRRRLCARHQ QQYATSGAPP SAADGSGAAA GVHPSYAATS FIMPQPHHLG 180 YLGQQATTLP VVHHHPAAAA GGGGGGGGNN NKQIMAAAAA GAYDGGAALY NNTSHQQEEW 240 TMELSNCSAS PGSSDDGTML PPCCRRPLRT LDLFPTKSST AGLKDECGSS KSSSCSTSTN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105160.1	8e-66	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	7e-67	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	B6TVS2	5e-65	B6TVS2_MAIZE; WUSCHEL-related homeobox 3B
STRING	GRMZM2G069028_P01	3e-65	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]