PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05780.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 352aa MW: 37689.1 Da PI: 10.0096

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05780.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.5	2.2e-23	74	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkke 71 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e+kk+ ++ + + + +rtgC a+l++k+ Zmw_sc05780.1.g00010.1.sm.mk 74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQESKKSqdesgagggtSSPAPPRCPDSRTGCLASLTIKLI 153 6***************99997666.**************998888888886666666889*********** PP FAR1 72 k.dgkwevtkleleHnHela 90 + ++vt+++ eHnH+la Zmw_sc05780.1.g00010.1.sm.mk 154 PsANAFRVTDFVAEHNHPLA 173 9999************97 PP
2	FAR1	70	5.5e-22	221	320	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 fYn+YA+++GFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k Zmw_sc05780.1.g00010.1.sm.mk 221 FYNRYAEHIGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgvvaisangaagsAGTPRPGPPPTRTGCQARMVIK 299 9***********9976665..999************9999****999876777778899******** PP FAR1 70 kekdgkwevtkleleHnHela 90 + +++v+k+ eHnH+la Zmw_sc05780.1.g00010.1.sm.mk 300 ITPCRTYRVAKFFPEHNHPLA 320 *****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-20	74	173	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.4E-19	221	320	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MSAAPDPSHL SGDSSPSSPS SYGSSSPSSF GAADPAATNL AQEASASAAG DEADASPTSP 60 HVGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQESKKSQ 120 DESGAGGGTS SPAPPRCPDS RTGCLASLTI KLIPSANAFR VTDFVAEHNH PLASAAPAVS 180 LALLPPSSSR HSIAAAASLP DPKDGPHPDM HFETEEDAYV FYNRYAEHIG FSVRRSYKKR 240 KRGVIVSRIF VCSREGVSDR AKQEGVVAIS ANGAAGSAGT PRPGPPPTRT GCQARMVIKI 300 TPCRTYRVAK FFPEHNHPLA NPDSVHKLRS HKMRARAHEL GAGEFHRRKQ GK

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MSAAPDPSHL SGDSSPSSPS SYGSSSPSSF GAADPAATNL AQEASASAAG DEADASPTSP  60
HVGMYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQESKKSQ  120
DESGAGGGTS SPAPPRCPDS RTGCLASLTI KLIPSANAFR VTDFVAEHNH PLASAAPAVS  180
LALLPPSSSR HSIAAAASLP DPKDGPHPDM HFETEEDAYV FYNRYAEHIG FSVRRSYKKR  240
KRGVIVSRIF VCSREGVSDR AKQEGVVAIS ANGAAGSAGT PRPGPPPTRT GCQARMVIKI  300
TPCRTYRVAK FFPEHNHPLA NPDSVHKLRS HKMRARAHEL GAGEFHRRKQ GK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804639.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025804640.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7EWC7	0.0	A0A2T7EWC7_9POAL; Uncharacterized protein
STRING	Pavir.Ba00914.1.p	0.0	(Panicum virgatum)
STRING	Pavir.J10702.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967