PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05723.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 396aa MW: 43304.5 Da PI: 8.2763 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.5 | 6.6e-28 | 147 | 200 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eC++NhAa++G+h++DGCgEfmps e + l CaACgCHR+FHRre + Zmw_sc05723.1.g00050.1.am.mk 147 QCRYRECQRNHAAKMGAHVLDGCGEFMPSAYE--GPGLLACAACGCHRSFHRREAV 200 79**************************9444..5999***************986 PP | |||||||
2 | Homeobox | 15.6 | 2.8e-05 | 293 | 348 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq +++ e+ + + ++p+ e+ +++g++ r+ kvW +N + Zmw_sc05723.1.g00050.1.am.mk 293 KRFRTKFTAEQKDRMREFAHrvgwRIHKPDSEAVDVFCAQVGVSRRVLKVWMHNNK 348 789***********987655888779****************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-15 | 144 | 198 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.9E-24 | 148 | 199 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-24 | 149 | 198 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.677 | 150 | 198 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 284 | 351 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-19 | 285 | 349 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.7E-27 | 292 | 348 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00658 | 293 | 346 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MEYNRSSHVE EEEEEDDLDE EEEEYDDHRY TTAPAAPVGA PLQQLVPGQH HGPVGSRSSM 60 MDSAAAAFSR PFLPPNSSLV SQVPLPPGFL PAHRQHPQAH PRRRERAVGT QHRHLRCEQA 120 RNGATRLPVS TLAVTTGGVA MGAEPTQCRY RECQRNHAAK MGAHVLDGCG EFMPSAYEGP 180 GLLACAACGC HRSFHRREAV HGVAAAAALS PIAAATPNAY SSGRVIPLLL APPRMQTRPH 240 VPASPSSAPA SLTESSSEEL RGPAPARPHP PAPTSMHQLT VGSASAPPAP SKKRFRTKFT 300 AEQKDRMREF AHRVGWRIHK PDSEAVDVFC AQVGVSRRVL KVWMHNNKHL AKITPQSTSS 360 QQPTPTMPPP QQHHHQDDHH YPLLPPPHQQ QQPQND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 291 | 349 | 16 | 74 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826471.1 | 1e-103 | zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q8S3Q9 | 1e-69 | ZHD7_ORYSJ; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A1E5W0S9 | 1e-106 | A0A1E5W0S9_9POAL; Zinc-finger homeodomain protein 7 | ||||
STRING | GRMZM2G069365_P01 | 2e-99 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13491 | 23 | 29 |