PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05718.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 567aa MW: 62370 Da PI: 7.5692

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05718.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.5	5.3e-09	324	362	17	55
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 e ++k +yps++++ LA+++gL+ +q+ +WF N+R ++ Zmw_sc05718.1.g00040.1.am.mk 324 ETYYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 362 568899******************************885 PP
2	ELK	36.4	1.2e-12	282	303	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+Ll+KYsgyL+sLkqE+s Zmw_sc05718.1.g00040.1.am.mk 282 ELKHHLLKKYSGYLSSLKQELS 303 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	8.3E-8	112	187	IPR005540	KNOX1
Pfam	PF03790	2.4E-15	113	186	IPR005540	KNOX1
SMART	SM01256	2.3E-24	194	245	IPR005541	KNOX2
Pfam	PF03791	2.0E-20	200	243	IPR005541	KNOX2
SMART	SM01188	570	203	223	IPR005539	ELK domain
Pfam	PF03789	1.4E-9	282	303	IPR005539	ELK domain
SMART	SM01188	4.9E-7	282	303	IPR005539	ELK domain
PROSITE profile	PS51213	11.331	282	302	IPR005539	ELK domain
PROSITE profile	PS50071	12.698	302	365	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-19	303	378	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-11	304	369	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.6E-26	307	368	IPR009057	Homeodomain-like
CDD	cd00086	7.65E-12	314	366	No hit	No description
Pfam	PF05920	1.8E-14	322	361	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	340	363	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
ELGDSGRSAR SLHQYIPGDP PAPMEEISHN HFGGVGASSH GQHQHNPWGS ALSAVVGPPP 60 PLTLNTAATG NSGASSGGNN PVLQLANGGS LLDACVKAKE PSSSSPYAGD VEAIKAKIIS 120 HPHYYSLLAA YLECQKASPT LLLLLLHEKL LLHLMSNMEH AACNCKLVGA PPEVSARLTA 180 MAQELEARQR TSLLGLGSAT EPELDQFMEA YHEMLVKFRE ELTRPLQEAM EFMRRLELQL 240 DSLSISSRSL RNILSSGSEE DQECSGGETQ LPEVDAHGVD QELKHHLLKK YSGYLSSLKQ 300 ELSKKKKKGK LPKEARQKLL SWWETYYKWP YPSETQKVAL AESTGLDLKQ INNWFINQRK 360 RHWKPSEEMH HMMMDGYHTS NAFYMDGHFF NEAGMYRTYL QCDGRWCPPK RRRHPPVLAP 420 RLRRRNRPSE VRVRSITCLG WVCLCLALVP ARTRASFGIL GAMAPVHGVA GRCLPRADEA 480 ASGARDAACP EFGHDAQADS AAASVLQLQV CKPLDGMPAR TGITSESFLA FGFPICDAGC 540 SLMCALANWS DRWERLLSST GDDGVSP

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

ELGDSGRSAR SLHQYIPGDP PAPMEEISHN HFGGVGASSH GQHQHNPWGS ALSAVVGPPP  60
PLTLNTAATG NSGASSGGNN PVLQLANGGS LLDACVKAKE PSSSSPYAGD VEAIKAKIIS  120
HPHYYSLLAA YLECQKASPT LLLLLLHEKL LLHLMSNMEH AACNCKLVGA PPEVSARLTA  180
MAQELEARQR TSLLGLGSAT EPELDQFMEA YHEMLVKFRE ELTRPLQEAM EFMRRLELQL  240
DSLSISSRSL RNILSSGSEE DQECSGGETQ LPEVDAHGVD QELKHHLLKK YSGYLSSLKQ  300
ELSKKKKKGK LPKEARQKLL SWWETYYKWP YPSETQKVAL AESTGLDLKQ INNWFINQRK  360
RHWKPSEEMH HMMMDGYHTS NAFYMDGHFF NEAGMYRTYL QCDGRWCPPK RRRHPPVLAP  420
RLRRRNRPSE VRVRSITCLG WVCLCLALVP ARTRASFGIL GAMAPVHGVA GRCLPRADEA  480
ASGARDAACP EFGHDAQADS AAASVLQLQV CKPLDGMPAR TGITSESFLA FGFPICDAGC  540
SLMCALANWS DRWERLLSST GDDGVSP

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269\|PubMed:17965274}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981913.1	0.0	homeotic protein knotted-1
Swissprot	P24345	0.0	KN1_MAIZE; Homeotic protein knotted-1
TrEMBL	A0A368SF91	0.0	A0A368SF91_SETIT; Uncharacterized protein
STRING	Pavir.J00864.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9886	31	45

Publications ? help Back to Top
Lowe B,Mathern J,Hake S Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication. Genetics, 1992. 132(3): p. 813-22 [PMID:1334895] Sinha N,Hake S Mutant characters of knotted maize leaves are determined in the innermost tissue layers. Dev. Biol., 1990. 141(1): p. 203-10 [PMID:2391001] Chen H,Jackson D,Kim JY Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking. Plant Signal Behav, 2014. 9(3): p. e28355 [PMID:24603432] Sinha NR,Williams RE,Hake S Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates. Genes Dev., 1993. 7(5): p. 787-95 [PMID:7684007] Greene B,Walko R,Hake S Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations. Genetics, 1994. 138(4): p. 1275-85 [PMID:7896105] Mathern J,Hake S Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype. Genetics, 1997. 147(1): p. 305-14 [PMID:9286690]