PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05712.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19625.7 Da PI: 10.0556 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 9.6e-24 | 12 | 60 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtfskRr g+ KKA EL vLCd++va+++fs +gk+++++ Zmw_sc05712.1.g00060.1.sm.mk 12 RIENAVSRQVTFSKRRRGLAKKARELAVLCDVDVALLLFSDKGKFHDFA 60 8**********************************************97 PP | |||||||
2 | K-box | 50.9 | 6.6e-18 | 62 | 110 | 34 | 82 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 R+l+Ge+L++L+++e qqLeqq+e +l++iRs+K+++l+eq + l k Zmw_sc05712.1.g00060.1.sm.mk 62 HGRNLMGEQLDTLTVREVQQLEQQIEIALRNIRSRKEKMLMEQKSILEK 110 66*****************************************887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.553 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-28 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-24 | 4 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-25 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-23 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-25 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-25 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.581 | 42 | 141 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.9E-14 | 56 | 109 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGRGRGRVEV RRIENAVSRQ VTFSKRRRGL AKKARELAVL CDVDVALLLF SDKGKFHDFA 60 AHGRNLMGEQ LDTLTVREVQ QLEQQIEIAL RNIRSRKEKM LMEQKSILEK VSVHPTSKLA 120 LLYIDFLQLN LLIIWLTNHS SDDSDEPGPA STAPPERPSD LPWWMLRPSA EG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662068.1 | 6e-57 | MADS-box transcription factor 14 isoform X1 | ||||
Swissprot | Q2QQA3 | 1e-40 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | A0A3L6G567 | 2e-63 | A0A3L6G567_MAIZE; MADS-box transcription factor 20 | ||||
STRING | Sb08g015555.1 | 1e-46 | (Sorghum bicolor) |