PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05685.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 331aa    MW: 36102.1 Da    PI: 11.261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05685.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05251275123
                                   EEETTTTEEESSHHHHHHHHHH..T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                                   +kC  C + F+r ++L+ H+rt  H
  Zmw_sc05685.1.g00010.1.am.mk 251 HKCAACFRQFNRMEHLVEHMRTarH 275
                                   79*******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-4249273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.05251280IPR007087Zinc finger, C2H2
PROSITE patternPS000280253275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTPLQLSILT KNQRQLKEPY NTTESKDKNS GRSGVADHGC RAVASSSLCA SWRRPCKLGA  60
VNPSGGRSRQ RDEGPRASPP HVDTRVALAL SLRDRLIAIG KATRTRTHEQ QLDICRVPIW  120
MHPATAAGSG DRDGGKARRG MFTAYPARNR SARANDLAAG RRRPGLFVSA FGRGSHLNLL  180
LVDGSAPHTA ERRKKDSSRV VSGSLAAAEL SIGAQWRILD FATTLLSLQA SPQQQIAERE  240
SIKGQAASRR HKCAACFRQF NRMEHLVEHM RTARHSAHEP RCDVCFKRCR SFEALRDHLG  300
AGGSSLPNSA HCATVFAARG CTLCLGVFPV E