PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05682.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 225aa    MW: 24330.6 Da    PI: 4.5013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05682.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-101291754290
                                   TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                   +grsW   ++ + k ++  + + W++Fv +n+L++gD +vF+l+g +e+
  Zmw_sc05682.1.g00070.1.sm.mk 129 RGRSWATSYCGDLKCKK--FDGAWRDFVVDNRLRVGDACVFELVGADET 175
                                   69*******66666555..899*********************987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-1593178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1394177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1197171No hitNo description
PROSITE profilePS508639.545129183IPR003340B3 DNA binding domain
PfamPF023622.9E-8129175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
METPASSACP WKQLPDASAK WELDAGIKPK LPDPCPTFKL DAGVKPKLPD ACATFKPEAG  60
VEPKPEPCEE DAPPLSPLAG DAADDDWEIT PVSGNHPFFT TVMSQSHVQK SLQLRHLPAA  120
RVPAVLLCRG RSWATSYCGD LKCKKFDGAW RDFVVDNRLR VGDACVFELV GADETEVEAE  180
AEARRNGGEK AVVVFRVQVL CGGLPEEITS KGATSDEPLV IVDYD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811196.12e-69B3 domain-containing protein Os06g0112300-like isoform X1
SwissprotQ9LHY93e-36Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A2T8JF477e-68A0A2T8JF47_9POAL; Uncharacterized protein
STRINGPavir.Db02470.1.p7e-64(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]