PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05652.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 432aa MW: 47304.8 Da PI: 7.028 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.3 | 3.4e-28 | 166 | 220 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wtp+LH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQkYR++ Zmw_sc05652.1.g00070.1.am.mk 166 KRKVDWTPDLHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQKYRSH 220 5799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.937 | 163 | 222 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-27 | 164 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-27 | 166 | 220 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.34E-17 | 166 | 223 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-8 | 169 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 432 aa Download sequence Send to blast |
MLEVLRSPGS KAADQLHVVD AGFPTSTDQC GSGGDEFMLD GENLLDYIDF TCCDVPSFFD 60 ADGDILPDLE TELLAEFEDH ERGGGKPPDD VASSSQGDHH HHKEDEERLL LQVEEEEGQT 120 AQTKKSGSGD EVSLASAVTS TDTSKSSSAS AEKKKKKKRS KNSNGKRKVD WTPDLHRRFV 180 QAVEQLGIDK AVPSRILEIM GIEGLTRHNI ASHLQKYRSH RKHLMAQEAE AASWAKKRQI 240 YAAARGAPRL TKDMPPAAAA PWVVRTTIRL PSPPFGRPLH VWGHPSTAVE ATAAPMLPVW 300 PRHLAPVDRA YWHQPPYNGA RTWGPMTQGT PCVPPPIMPR FPTPPVPGTM MPHPMYRPPM 360 PPPPQITASN VATLQLRLDA HPSKESIDAA IGDVLAKPWL PLPLGLKPPS LDSVMSELHK 420 QGIPKIPPSS YL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-16 | 171 | 222 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 152 | 158 | KKKKKKR |
2 | 154 | 161 | KKKKRSKN |
3 | 154 | 167 | KKKKRSKNSNGKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818980.1 | 1e-127 | probable transcription factor GLK2 isoform X3 | ||||
Swissprot | Q5NAN5 | 2e-96 | GLK2_ORYSJ; Probable transcription factor GLK2 | ||||
TrEMBL | A0A2T8IPG3 | 1e-128 | A0A2T8IPG3_9POAL; Uncharacterized protein | ||||
STRING | Si001336m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Publications ? help Back to Top | |||
---|---|---|---|
|