PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05599.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 42441.1 Da PI: 5.9545 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.5 | 8.9e-17 | 207 | 253 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL + +eY+ksLq Zmw_sc05599.1.g00010.1.am.mkhc 207 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDESIEYLKSLQ 253 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.17E-17 | 198 | 257 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-20 | 201 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.216 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-14 | 207 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-22 | 207 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-17 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
ADSDLVELLW HNGSVVAQPQ ATHQRAATPS DRPSSSGLTG EETAAWFPDT LDDALEKDLY 60 TQLWYSSIVD ASPQPAGDAL GGPSSQPPPV GSGGVESSWA GDISSTFCGS NQVFDGVPVG 120 DTALPSEAPC GTSTRDGAGT GTSSSGGSGS NFGGSGLRSD GGHVHKKKGR CRDDADSRSE 180 DIECEATEVT KSSRRYGSKR RTRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS 240 ILDESIEYLK SLQMQVQIMW MTSGMAPMMF PGAYQFMSPM ALGMNSACIS SAQSLGQIPR 300 VPYMTHPLPN HMPLHSSPVL NPMNSLNVAN QMQNINIREI SNPFLHPDGE QTAAPQVLGS 360 HTYGPQTTQA AQPRRITELP ASTVVPTSTA GLPPTNGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 215 | KRRTRAAEVHNLSERRRR |
2 | 211 | 216 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981539.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_004981540.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_012704121.1 | 0.0 | transcription factor PIF4 isoform X1 | ||||
Refseq | XP_012704122.1 | 0.0 | transcription factor PIF4 isoform X2 | ||||
Swissprot | Q10CH5 | 1e-157 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A1E5URH3 | 0.0 | A0A1E5URH3_9POAL; Transcription factor PIF5 | ||||
STRING | Si035818m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 |
Publications ? help Back to Top | |||
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