PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05595.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 384aa MW: 42458.8 Da PI: 6.6513

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05595.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.3	2.1e-05	4	38	13	40
zf-B_box 13 elqlfCedCqqllCedClleeHkg.......Htvv 40 +++++C +++ +lC+ C + H+ H+v+ Zmw_sc05595.1.g00020.1.sm.mk 4 RARWHCPEDDAFLCQACDAAVHSAnplarrhHRVR 38 5899******************6689999977765 PP
2	CCT	66.5	7.3e-23	301	344	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Zmw_sc05595.1.g00020.1.sm.mk 301 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 344 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	3.13E-7	1	39	No hit	No description
Pfam	PF06203	8.5E-18	301	343	IPR010402	CCT domain
PROSITE profile	PS51017	15.993	301	343	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MRRRARWHCP EDDAFLCQAC DAAVHSANPL ARRHHRVRLL TASSSSSSPR CDPDAPAWLH 60 GLKRGPRTPR SKPGSKHEAA SAAIPAAASA AVPDLEAEDS GSGIVGDTYI EHGLLDDDDD 120 EDILYLVPEF DPMLAELYNP MDDEGEEQKP VCLISTETSP EFASGSADAK GLSAFDVPDM 180 ELASFAADME SLLMGVEEGF DHPGFLSEQK PQVNVDFGSD LEVTATPAPE REDKKRKRPQ 240 MILKLDYEGV IASWAREGGS PWFHGERRPH LDPNDSWPDF SAGIVRGGLV CNVTAVTGGE 300 REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTALPPLP RPPQPSQQQK 360 PQRAPPPTGM VLAPQVGVHG HLRF

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MRRRARWHCP EDDAFLCQAC DAAVHSANPL ARRHHRVRLL TASSSSSSPR CDPDAPAWLH  60
GLKRGPRTPR SKPGSKHEAA SAAIPAAASA AVPDLEAEDS GSGIVGDTYI EHGLLDDDDD  120
EDILYLVPEF DPMLAELYNP MDDEGEEQKP VCLISTETSP EFASGSADAK GLSAFDVPDM  180
ELASFAADME SLLMGVEEGF DHPGFLSEQK PQVNVDFGSD LEVTATPAPE REDKKRKRPQ  240
MILKLDYEGV IASWAREGGS PWFHGERRPH LDPNDSWPDF SAGIVRGGLV CNVTAVTGGE  300
REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTALPPLP RPPQPSQQQK  360
PQRAPPPTGM VLAPQVGVHG HLRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	327	RRTRLFAKKIRYEVRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982006.1	1e-180	zinc finger protein CONSTANS-LIKE 16
TrEMBL	A0A1E5WFM1	0.0	A0A1E5WFM1_9POAL; Zinc finger protein CONSTANS-LIKE 7
STRING	Si035937m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10004	22	28