PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05549.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 19532.9 Da PI: 7.3881 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.4 | 1e-32 | 22 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd..CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavg 78 +CaaC++lrr+C + Cvlapyfpa++p+++a vh +FG+sn ++l++ p eer +a+++++ eA++r+rdPvyG++g Zmw_sc05549.1.g00030.1.am.mk 22 RCAACRYLRRRCDPAggCVLAPYFPASRPRRYADVHAVFGTSNATRLIQVSlPVEERARAADTMAAEAQWRVRDPVYGSAG 102 6***********99777*******************************96538899************************* PP DUF260 79 vilklqqqleqlkaelallkee 100 +i +lqq+++ ++ ela++++e Zmw_sc05549.1.g00030.1.am.mk 103 IIDRLQQEIRAVQRELATTRAE 124 *****************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.42 | 21 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-32 | 22 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSSSAGNTEL ELGSGGSSGS GRCAACRYLR RRCDPAGGCV LAPYFPASRP RRYADVHAVF 60 GTSNATRLIQ VSLPVEERAR AADTMAAEAQ WRVRDPVYGS AGIIDRLQQE IRAVQRELAT 120 TRAELAMRAG TVAARTAGAQ RAPATTPPQP PAVEVRDGGH PLAVQHGEEA PVLDPDVFLN 180 LDDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 23 | 125 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 23 | 125 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683529.1 | 1e-58 | LOB domain-containing protein 24 | ||||
TrEMBL | K3YMP0 | 1e-56 | K3YMP0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb01140.1.p | 5e-64 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |