PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05540.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 354aa    MW: 37795.7 Da    PI: 7.0922
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05540.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31219274156
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                     k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Zmw_sc05540.1.g00060.1.sm.mkhc 219 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 274
                                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.744216276IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-28217277IPR009057Homeodomain-like
SuperFamilySSF466892.51E-16217277IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25219274IPR006447Myb domain, plants
PfamPF002491.2E-7221272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGLDVGEIGV GLDLGLDLRL FAARSAGRMA SAGGSAAVDA CIKGLEEERR KIEMFRRELP  60
LCARLLADVI EELKEEAVKR GGDAAPTKAD DADKRKWMST AQLWVDSEAK SEESEKEQRS  120
EITSPESEFL GGAPMPLRAV AAAQPPPPLC FRPEDMVAGT VGLVAMPVLP PSGKRPLSPV  180
PAGDEHRQNL AARFAATMPP SGPALSVHAQ TQQQQQARKA RRCWSPELHR QFVAALHQLG  240
GPQVATPKQI REVMQVDGLT NDEVKSHLQK YRLHNRRSPG AAPETQQVVL VGGLCVPKEQ  300
RSSQSGSPQC PLQFSGSGSG VAAASAASIG RDGNSSSSSD EDDKSEGYSR KLTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-14219272154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14219272154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14219272154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14219272154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981657.11e-135transcription factor HHO5
TrEMBLA0A059Q2Z51e-137A0A059Q2Z5_9POAL; DNA binding protein
STRINGSi036412m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107