PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05537.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 38201.4 Da PI: 10.6168 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.7e-31 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ ++p+++ +tYegeHnh+ Zmw_sc05537.1.g00020.1.sm.mkhc 287 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPTMLLVTYEGEHNHS 344 9************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.0E-16 | 237 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-32 | 273 | 345 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.826 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-26 | 283 | 345 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEVEVASRA AVESCHRVLA LLSQQQDPAL LRSLASETGE ACAKFRKVVA LLGDTNGGGS 60 GHARGRFSRR GRPLSFLNQK GFSGSGASIE TMPISSAAPS SSTSYMHPRA RINGVSESRG 120 LDFASSSGAH QFGAPKLVQP LSVQFQIGNV AHRYPFPQQP SRQKLQAEIF KRSNSGISLK 180 FESPCPSAAT GTVSSARSFM SSLSMDGSVV SLEGKRPFHL VGAPAASDPL DVQHVPKRRC 240 MGKGEDGRGK CAVTGRCHCS KRSRKLRNKR SIKVPAISNK IADIPPDEYS WRKYGQKPIK 300 GSPHPRGYYK CSTVRGCPAR KHVERCVDEP TMLLVTYEGE HNHSRMPAQS AQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-19 | 282 | 348 | 14 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-19 | 282 | 348 | 14 | 78 | Probable WRKY transcription factor 4 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809630.1 | 0.0 | protein WRKY1-like isoform X1 | ||||
TrEMBL | A0A2T7EIW2 | 0.0 | A0A2T7EIW2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38176.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |