PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05506.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 618aa MW: 66064.5 Da PI: 8.2145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05506.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	361	382	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F + + H+r+H Zmw_sc05506.1.g00010.1.am.mk 361 TCPECGKTFLSDKAMYGHLRSH 382 8*********999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.367	360	382	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	362	382	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MLGLIRDERD GDFLIPTLTE RHGRGTMTDR STERASPRAS SRPPASWRSG TGERTVIEGD 60 DDESSYPYLG DRLTVRSAPG RATGGGRLGY IIIRRAELAI MAFDFHLTVR TSKSKSKAAN 120 VRTGKTAQQP HTPHVHLHAS GLSPASLAVT QQAEASSEEP ALRSGVPAPI PPAPEVRVCR 180 ELRASWEGSC RFFDLLRPRG SVSSVPCILR PSLSTYTGRL PAWSRPRSGG VVQLGSPRPC 240 CAQCAYASAG SPADCDASGF DRLPIPVPPR ETQILCDPST TTSTMDLRAY CIKATEAASA 300 LSIHSEDDEE VVKLTSNAVL LKLEVEAGTS AGVTASCKGS GLSPLGLDNA KAAGSRGRDL 360 TCPECGKTFL SDKAMYGHLR SHPERGYKGA IRPDATASVT AVAGDKKPER KVPQKEAGES 420 PATNMSVTTP AVAGEKRQKE ESWLWTKGSV TAKRRRGSST PSAASAPVAA AQSSSSCSEE 480 EEAAMILLEI ASGVTTSETQ QSRQTVSTRD AKHQIPEVDE QPMLLDHVAR NQMIPEFVQL 540 MSPDHVACDV MAHQTLEDGQ QIVQPELAPV VILESQTPEI KELTVPKDAV VAMFQDKKTP 600 ANQQQRAAPG RGAKKSKK

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MLGLIRDERD GDFLIPTLTE RHGRGTMTDR STERASPRAS SRPPASWRSG TGERTVIEGD  60
DDESSYPYLG DRLTVRSAPG RATGGGRLGY IIIRRAELAI MAFDFHLTVR TSKSKSKAAN  120
VRTGKTAQQP HTPHVHLHAS GLSPASLAVT QQAEASSEEP ALRSGVPAPI PPAPEVRVCR  180
ELRASWEGSC RFFDLLRPRG SVSSVPCILR PSLSTYTGRL PAWSRPRSGG VVQLGSPRPC  240
CAQCAYASAG SPADCDASGF DRLPIPVPPR ETQILCDPST TTSTMDLRAY CIKATEAASA  300
LSIHSEDDEE VVKLTSNAVL LKLEVEAGTS AGVTASCKGS GLSPLGLDNA KAAGSRGRDL  360
TCPECGKTFL SDKAMYGHLR SHPERGYKGA IRPDATASVT AVAGDKKPER KVPQKEAGES  420
PATNMSVTTP AVAGEKRQKE ESWLWTKGSV TAKRRRGSST PSAASAPVAA AQSSSSCSEE  480
EEAAMILLEI ASGVTTSETQ QSRQTVSTRD AKHQIPEVDE QPMLLDHVAR NQMIPEFVQL  540
MSPDHVACDV MAHQTLEDGQ QIVQPELAPV VILESQTPEI KELTVPKDAV VAMFQDKKTP  600
ANQQQRAAPG RGAKKSKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14400	14	25