PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05484.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 326aa MW: 35160.6 Da PI: 4.4498 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.5 | 1.2e-15 | 262 | 297 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ k+ Zmw_sc05484.1.g00050.1.sm.mkhc 262 CHHCGISAsaTPMMRRGPDGPRTLCNACGLMWANKN 297 *****88888**********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.142 | 127 | 162 | IPR010399 | Tify domain |
SMART | SM00979 | 9.4E-13 | 127 | 162 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.3E-13 | 130 | 161 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 187 | 229 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.8E-16 | 187 | 229 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-9 | 256 | 308 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-10 | 260 | 297 | No hit | No description |
CDD | cd00202 | 1.09E-10 | 261 | 297 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-13 | 261 | 297 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.5E-13 | 262 | 297 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 262 | 289 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERPA QPAEDATLAV DQLAAAAAQA ESMNNYMEQQ QQQHQQEVGE 60 EEEEEEEEED EEMEDDEEED EGAEGDGQEG GVTGQQAPMD SEAAAAAAAA SGMQMDPHGA 120 MVPTTVPPVS SNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGLG GASSSTPYSK 180 RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNKGQFTSSK PKPDEAAAEL 240 TTADGTPNWG ALEGRPPSAA ECHHCGISAS ATPMMRRGPD GPRTLCNACG LMWANKNGNA 300 TQIISAISAE QENPAAAMAN GHELST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753285.1 | 1e-142 | GATA transcription factor 20 | ||||
Swissprot | Q5Z4U5 | 1e-131 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0A9EJS6 | 1e-146 | A0A0A9EJS6_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G33980.1 | 1e-137 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |