PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05479.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 813aa    MW: 91539.3 Da    PI: 10.1827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05479.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-151771799
                                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                                  ++p kf++++++ + e   + l+ +sg++W++ l  +k++++ +l +GW +F ka++L+e+D +vF+  ++ s+f  +v+vf+
  Zmw_sc05479.1.g00040.1.am.mk  1 SIPEKFVRNFKITE-E--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLVFTCRNErSSF--NVQVFE 76
                                  69*****8887664.4..599999**********..*******************************65444666..999997 PP

                                  S CS
                            B3 99 k 99
                                  +
  Zmw_sc05479.1.g00040.1.am.mk 77 E 77
                                  6 PP
2B341.81.9e-13191289199
                                   EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                            B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                   f++vl +s+  ++ + +++p   a++h   +++s++++l+ ++  +sW+v++ y  +s r++      +Fv++n+L+egD+
  Zmw_sc05479.1.g00040.1.am.mk 191 FVTVLQKSHCQRRnNSMTIPSGLAADHL--EARSQDIILRRPNRkESWTVRY-YYTSSHRCIQNLQFFNFVRENKLREGDV 268
                                   6667777776665588*********996..357889*****55549******.777777777777799************* PP

                                   EEEEE-SS.SEE..EEEEE-S CS
                            B3  80 vvFkldgr.sefelvvkvfrk 99 
                                   ++F+l++  ++ +++v+v+r+
  Zmw_sc05479.1.g00040.1.am.mk 269 CLFELVKGaRRVTMTVHVVRR 289
                                   ****99877999*****9997 PP
3B351.12.5e-163914741099
                                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                       +rl++p kf ++  ++ + +k  +l+ +sg+ W v +  +k++++  +t+GW +F+ a+gL+e+D +vF+++g+++f
  Zmw_sc05479.1.g00040.1.am.mk 391 FA--QRLSIPQKFGNALTLNANATKRFSLKAPSGELWIVGV--TKHGDELCFTSGWGGFAVAHGLQENDLLVFTRSGKRSF 467
                                   33..57********99999999999****************..*******************************8877777 PP

                                   ..EEEEE-S CS
                            B3  91 elvvkvfrk 99 
                                      v+vf++
  Zmw_sc05479.1.g00040.1.am.mk 468 --DVMVFDA 474
                                   ..8999886 PP
4B3322.2e-106076921899
                                   --HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS
                            B3  18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 
                                   l k+++++ ++   +s ++ l    ++ ++W v++ y +++ r +  + W +Fv++n+L+  D++vF+l+  +  +++++v
  Zmw_sc05479.1.g00040.1.am.mk 607 LQKSHMNRKNNRLMRSHEVLLLRpgRKEQKWHVRY-YHGSGTRGFGCRRWVKFVRDNRLRRDDVCVFELVkkSGaRRTTMV 686
                                   55666655543444556666666235569******.6666666666679*******************8833234566777 PP

                                   EEEE-S CS
                            B3  94 vkvfrk 99 
                                   v+v+rk
  Zmw_sc05479.1.g00040.1.am.mk 687 VHVVRK 692
                                   777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0025178IPR003340B3 DNA binding domain
PROSITE profilePS5086314.113178IPR003340B3 DNA binding domain
PfamPF023621.4E-11177IPR003340B3 DNA binding domain
CDDcd100171.45E-14175No hitNo description
Gene3DG3DSA:2.40.330.104.5E-14180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-12280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17186289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-19186290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-14189288No hitNo description
SMARTSM010196.0E-8191290IPR003340B3 DNA binding domain
PfamPF023626.5E-12191289IPR003340B3 DNA binding domain
PROSITE profilePS5086310.743192290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-19377477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-19378477IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816380475IPR003340B3 DNA binding domain
CDDcd100178.95E-16382473No hitNo description
SMARTSM010194.4E-10383475IPR003340B3 DNA binding domain
PfamPF023625.1E-13393474IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-14596692IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-11596692IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-12601691No hitNo description
SMARTSM010191.0E-4603693IPR003340B3 DNA binding domain
PfamPF023627.7E-8621692IPR003340B3 DNA binding domain
PROSITE profilePS508639.883624693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
SIPEKFVRNF KITEEAVDLK VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV  60
FTCRNERSSF NVQVFEESGC VKMPSLFGPN MCRHFSETAG RRAEHYSLSD SDDTTMPSQL  120
VGCPRDACTS KKRGREPDSP NSSSCHVKEE ESDGMYADSK YYYSRFANQL TNDEKEEVLG  180
LAPVGRDNPV FVTVLQKSHC QRRNNSMTIP SGLAADHLEA RSQDIILRRP NRKESWTVRY  240
YYTSSHRCIQ NLQFFNFVRE NKLREGDVCL FELVKGARRV TMTVHVVRRK VQGRGSGHGG  300
SIQACQVSPN PVLANTLASS SLTSSRRTEI SERKNKARTL SLSSSSSDTS IRCAYFPEMD  360
RQGCASCQKW RDHRSQDASR TRFIKLMTRD FAQRLSIPQK FGNALTLNAN ATKRFSLKAP  420
SGELWIVGVT KHGDELCFTS GWGGFAVAHG LQENDLLVFT RSGKRSFDVM VFDASGCEKV  480
SSFFMLGEGD PCRRKGFGGV KMGGQRAEHC GLSDSDDDAG TPLRLVESAR KASASKKKST  540
AGRTNPGGES TESPDSSHEE EQSDDRRAGS NCCYYSRSAS VLTEDEREEA LSLVSIRPGN  600
PAFVTVLQKS HMNRKNNRLM RSHEVLLLRP GRKEQKWHVR YYHGSGTRGF GCRRWVKFVR  660
DNRLRRDDVC VFELVKKSGA RRTTMVVHVV RKRNGRFVLL VRRKEVPWES SQQARAVAPG  720
CAVSRAITAA RVTGDPIIAA RGLRTQWRAA ADAGAGRRTA ARTVREAEPR HAMARVLEVD  780
EKVETEMGRA RQRRRRTKGA GQQESNLLED RGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.11e-120B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT22e-95Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A3L6RDD80.0A0A3L6RDD8_PANMI; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179