PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05474.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 290aa MW: 32258.6 Da PI: 6.4086 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303.5 | 5.1e-93 | 1 | 285 | 106 | 374 |
GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +e e+ vH++D++ +QW+ Ll+ La+Rpegpp+lR+T+v++ +k+ l +t+ L+k Ae+l+vpf+fn+ v++rl Zmw_sc05474.1.g00060.1.am.mk 1 MEAEKIVHVVDLGGADATQWLELLHLLAARPEGPPHLRLTAVSE----HKDVLTQTAIALSKEAERLDVPFQFNP-VVTRL 76 678999**************************************....9**************************.79*** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqea 246 ++l++e+Lrvk+gEala+ ++lqlh ll + +++s+ d++L+++++lsPkv+vv+eqea Zmw_sc05474.1.g00060.1.am.mk 77 DALDVESLRVKTGEALAITSSLQLHCLLasdddtaaggkdkkenrrspeSGLSPSTSRADAFLSALWGLSPKVMVVTEQEA 157 *********************************************997522233444789********************* PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerrerhe+l +W +r+e aGF+ v Zmw_sc05474.1.g00060.1.am.mk 158 SHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERRERHERLDRWARRMEGAGFGRV 238 ********************************************************************************* PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls++a qa++ + + dg++v ee+gs++l+W+dr+++svSaWr Zmw_sc05474.1.g00060.1.am.mk 239 PLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 285 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.022 | 1 | 265 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-90 | 1 | 285 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MEAEKIVHVV DLGGADATQW LELLHLLAAR PEGPPHLRLT AVSEHKDVLT QTAIALSKEA 60 ERLDVPFQFN PVVTRLDALD VESLRVKTGE ALAITSSLQL HCLLASDDDT AAGGKDKKEN 120 RRSPESGLSP STSRADAFLS ALWGLSPKVM VVTEQEASHN APALTERFVE ALNYYAALFD 180 CLEVVAARGS VERARVERWM LGEEIKNIVA CDGAERRERH ERLDRWARRM EGAGFGRVPL 240 SYYALLQARR AAQGLGCDGF KVREEKGSFF LCWQDRAIFS VSAWRGRRFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-43 | 1 | 287 | 124 | 381 | Protein SCARECROW |
5b3h_A | 4e-43 | 1 | 287 | 123 | 380 | Protein SCARECROW |
5b3h_D | 4e-43 | 1 | 287 | 123 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971220.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_022682001.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_025819415.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_025819416.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 1e-120 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | K3XHR4 | 0.0 | K3XHR4_SETIT; Uncharacterized protein | ||||
STRING | Si001436m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Publications ? help Back to Top | |||
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