PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05437.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 768aa    MW: 82593.1 Da    PI: 10.1298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05437.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-19537571135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Zmw_sc05437.1.g00030.1.am.mk 537 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 571
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.62E-13529572No hitNo description
SMARTSM004011.8E-19531581IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.694531567IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-16535571IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-12536568No hitNo description
PROSITE patternPS003440537562IPR000679Zinc finger, GATA-type
PfamPF003202.5E-17537571IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.5E-4586601IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MRFAVLVLLE MAKRSGAPSN RHRNRIWWAR PDEMGLPKEP RTTTSLEARP SGVARDFQLG  60
LRAVTPTASA RGLCSMPRIG QQIQTLVSMP TAAKLCFGRS APQRNCRIAV PLTGHVMRWG  120
LPIDSIETDA DMLNSGRVGD NFLNDDLLAR IACASHRTEH GFATLHSALV PLCFFSRLVD  180
QGKNQNAQEE QMISWRLQPW DPYRIPVAAA GAIPARLGPL AEHGLNPRWD ARSQRPPQAG  240
RGRRDRSNCA PRDRQRPTTR HAAVVLALDL APRALPTGAV DASEEPSQPM MSSRSSAPGC  300
AWETRAKPGK HGRCGGRPRL SRPESSSRDD SGPRGPASFP RRRYKNPSPL HALPPTSEPQ  360
HIARANLCDR TVAVAISKAR HPHLDLVVYP SLHSPRPASQ PASTSSLYRC LIATWGSSGR  420
WCNRIRRRCA IALFHQRAVH SCKKTKMLHE AAPCTCGLLY GSCGGGCSLL FSGDHHHYYM  480
QCDSDGAYGG SVDCTLSLGT PSTRRAEAGA ARAHQPNGGT HWEQSSGRQQ ESAARRCANC  540
DTTSTPLWRN GPRGPKSLCN ACGIRYKKEE RRAAAAAVAP SPTLASSLCN ACGIRYKKEE  600
RRAAAAAVAP SPTLASVDSG MEYAAGQPQQ WGWYGSAAVA KAAASSFGMF GDAGAEDGPC  660
LPWGIGVMPP SPAFGSVREM PSLFQLGFAC TICFASEFRL VVSRVCVFIR INPFATQVAA  720
GRSSSTLLSL PVGAELHATL AGPAPPLITP LSVELATQSK SSTVAHPS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102