PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05408.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 378aa    MW: 42416.7 Da    PI: 10.3257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05408.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.4e-21153208156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Zmw_sc05408.1.g00080.1.am.mk 153 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 208
                                   678899***********************************************998 PP
2START43.96.3e-1531037871129
                                   CT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
                         START  71 qWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
                                   +W e ++    ka t++v+ +g     + l+lm+ el ++sp+vp R+f f+Ry+rq + g w+i+d+S
  Zmw_sc05408.1.g00080.1.am.mk 310 KWMEFFPtivsKARTIDVLVNGmagrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEHGLWAIADIS 378
                                   77777777777********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-21139210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-23147215IPR009057Homeodomain-like
PROSITE profilePS5007118.091150210IPR001356Homeobox domain
SMARTSM003891.2E-19151214IPR001356Homeobox domain
PfamPF000461.3E-18153208IPR001356Homeobox domain
CDDcd000861.25E-18153211No hitNo description
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
PROSITE profilePS5084815.635298378IPR002913START domain
SuperFamilySSF559612.75E-8309378No hitNo description
PfamPF018527.5E-11309378IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MHRESAVKTA MLNEANAKRQ NLLCVRAAKG RHQTGGGHGH GRRESRDTLV CPASACPFEG  60
EGMVGYRVQP ALPVGRRRKE VLGRIHFHTR KRSNANTRSE VSVHILLPAS DCARSNRPSA  120
RRHGRGLRVR GVRAAMDFDD DVTEGGSDSK RRKKRYHRHT PRQIQQLEAM FKECPHPDEN  180
QRMQLSRELG LEPRQIKFWF QNRRTQMKAQ HERADNCFLR AENDKIRCEN IVMREALCNV  240
ICPSCGAPPL DRVSSLTSKY LGRPITQLPP VQPLSMTSPD LSVGGLGSPA ALGPSLDLDL  300
LSGASSGLAK WMEFFPTIVS KARTIDVLVN GMAGRSESLV LMYEELHVMS PVVPTREFCF  360
LRYCRQIEHG LWAIADIS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954072.13e-97homeobox-leucine zipper protein ROC8
SwissprotQ69T582e-87ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3L6F4D21e-137A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRINGSi016483m1e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15929915