PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05402.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 433aa MW: 46092.8 Da PI: 8.0744

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05402.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.8e-40	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zmw_sc05402.1.g00010.1.sm.mkhc 99 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 159 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	95	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	101	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAECRAGGGG GGDGLIKLFG KTIPVPEAAT AIGDADRDLQ RSGSNTTEPK GHETTLPDST 60 GSPSQQGVTD TEESSAENNS LADQQQGDPT KQKEKLKKPD KILPCPRCNS MDTKFCYYNN 120 YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA ALPVDPLCIS 180 AKINGTVLSF GSDTSSLDLT EQKKHLKEKL VPVTRIKNVD DQSIGSCAGE GSPKGGEPKL 240 INQKEQVVTA DKSASVVQHP CMNGVTMWPF SCAPPPACYT SGIPILFYPA AAAYWGCMVP 300 GAWNSPWLSH FQSEYATSPS SASPASIKSN CFTSGKRPRD GDEEGNAPGN GKVWVPKTIR 360 IDDADEVARS SILSLIGING DKVGKDGKGC KLSSIFEPKD EAETATHAII NGLPFLQGNP 420 AALSRSLTFQ EGS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAECRAGGGG GGDGLIKLFG KTIPVPEAAT AIGDADRDLQ RSGSNTTEPK GHETTLPDST  60
GSPSQQGVTD TEESSAENNS LADQQQGDPT KQKEKLKKPD KILPCPRCNS MDTKFCYYNN  120
YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA ALPVDPLCIS  180
AKINGTVLSF GSDTSSLDLT EQKKHLKEKL VPVTRIKNVD DQSIGSCAGE GSPKGGEPKL  240
INQKEQVVTA DKSASVVQHP CMNGVTMWPF SCAPPPACYT SGIPILFYPA AAAYWGCMVP  300
GAWNSPWLSH FQSEYATSPS SASPASIKSN CFTSGKRPRD GDEEGNAPGN GKVWVPKTIR  360
IDDADEVARS SILSLIGING DKVGKDGKGC KLSSIFEPKD EAETATHAII NGLPFLQGNP  420
AALSRSLTFQ EGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93