PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05399.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 743aa    MW: 80414.5 Da    PI: 9.9921
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05399.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34.2e-23172221150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   kri+n+++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  Zmw_sc05399.1.g00080.1.am.mk 172 KRIDNTTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYQYL 221
                                   79**********************************************96 PP
2K-box17.51.7e-072623401694
                         K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                   + + el+++ +    L+re+R +  +d e+ ++  L+ Le++Le ++ k+R  K++ +  +i++lq+  k  qee   L
  Zmw_sc05399.1.g00080.1.am.mk 262 ERRAELDQVGQMCALLERELRFMTLQDGEQYTVPSLELLEHNLEAAMYKVRCEKDRKIGGEISYLQNIIKGRQEERYGL 340
                                   56789999999999****************************************************9888888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.399164224IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-32164223IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-27165251IPR002100Transcription factor, MADS-box
PROSITE patternPS003500166220IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-22166186IPR002100Transcription factor, MADS-box
PfamPF003193.5E-21173220IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-22186201IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-22201222IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.531260354IPR002487Transcription factor, K-box
PfamPF014867.2E-10261343IPR002487Transcription factor, K-box
PRINTSPR012183.4E-7559582IPR003882Pistil-specific extensin-like protein
PfamPF011901.4E-14616697No hitNo description
PRINTSPR012183.4E-7625649IPR003882Pistil-specific extensin-like protein
PRINTSPR012183.4E-7678695IPR003882Pistil-specific extensin-like protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005199Molecular Functionstructural constituent of cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MLGCGSLANG LRRPLLLSAR ILQDPTERRP GQGVLVPSAF SALTGRFGSA IHWRRHVAVG  60
SRASRRQKQP SQSSQPCSLL HKRPINRQHA PPDTKKSYTM PRACSSLDGH VLAKLRALFK  120
ARASKQRAPF SLARPPPSPS AVTSRKLSSR CRADARACGV GNKMGRGRSE IKRIDNTTQR  180
QSTFYKRRDG LFKKARELSV LCDVDLLLLL FSASGKLYQY LSPTVPSVKE LVERYEAATH  240
TKVWTDIQQT FWWLTEDGCG QERRAELDQV GQMCALLERE LRFMTLQDGE QYTVPSLELL  300
EHNLEAAMYK VRCEKDRKIG GEISYLQNII KGRQEERYGL CDKELGNWAK PMASRQLTTA  360
PLPPRSRTSA AEGKYASVQV RNGSGIVQSA AVPRVHNLLL RCRLQHPTTS ETVSAAIDAS  420
TCGVAAHPAR TLSVRTGSPA SKVPSDKRGK PAIEQSTCST EEIDPFVRNG FARLASVAAE  480
PRLGLSTSPM ASLSSRAMAA GAVLLVAAML LPAHHAVAQK EEAKAPSTNA EDAVMPAPPS  540
DGYVATPPSD ESTPPAPYAV PMAPATPPAP DAVPMTPATP PAPYAIAMPP SSQAPELAPS  600
LAPAEAPAPV YPFVVVEGVV YCKSCKGKGY NKGIDASPLE GATAMMVCYG RQVVNATGTV  660
TDANGYFVIF FYDLKNFNVK TCKMYMVSSP TVKCNKPIYP PSKWIGLSLV KESRTIPPAG  720
FQGLYTPTSV LFFGPGVKGQ CPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-15164251188MEF2 CHIMERA
6byy_B6e-15164251188MEF2 CHIMERA
6byy_C6e-15164251188MEF2 CHIMERA
6byy_D6e-15164251188MEF2 CHIMERA