PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05377.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 319aa    MW: 34460.8 Da    PI: 8.2443
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05377.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-175097148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W +eEd+llvd+v+  G+g+W++ ++  g++R++k+c++rw +yl
  Zmw_sc05377.1.g00030.1.am.mk 50 KGPWAPEEDKLLVDYVQANGSGNWRLLPKLAGLNRCGKSCRLRWTNYL 97
                                  79********************************************97 PP
2Myb_DNA-binding51.72e-16103148148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++TteE+  +++++   G++ W+ Ia+ ++ gRt++++k++w+++l
  Zmw_sc05377.1.g00030.1.am.mk 103 RGPFTTEEHNTILQLHGIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 148
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3394597IPR017930Myb domain
SuperFamilySSF466891.42E-3047144IPR009057Homeodomain-like
SMARTSM007176.2E-134999IPR001005SANT/Myb domain
PfamPF002497.6E-165097IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2351104IPR009057Homeodomain-like
CDDcd001672.32E-95297No hitNo description
PROSITE profilePS5129426.66998152IPR017930Myb domain
SMARTSM007171.4E-14102150IPR001005SANT/Myb domain
PfamPF002495.6E-14103148IPR001005SANT/Myb domain
CDDcd001674.10E-10105148No hitNo description
Gene3DG3DSA:1.10.10.603.1E-26105152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MATHSAHSPF VPVLRRRTPS EGQSYRNGPF RKPKVIMGRT PCCDGKGVKK GPWAPEEDKL  60
LVDYVQANGS GNWRLLPKLA GLNRCGKSCR LRWTNYLRPD IKRGPFTTEE HNTILQLHGI  120
VGNKWSMIAA QLPGRTDNEI KNYWNTHLKK QLRQESHGED ALLAASASSS AARHMAQWET  180
ARLEAEARLS LLSCSTTTTT SATASSSSSA AEHAAGPDIF LRLWNSEVGE SFRGAAVHGQ  240
GPDPPPQANA IAPPPAPHAH GDESSMTNNG AASTMADEYQ AFLDLAVEEF ALLQGRLGAF  300
AVFPAADLLA GAALFAPFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27501527108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661372.11e-130putative homeodomain-like transcription factor superfamily protein isoform X1
SwissprotQ9M2D94e-80MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3L6G4I61e-130A0A3L6G4I6_MAIZE; Transcription factor MYB102
STRINGSb06g023620.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157