PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05355.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 493aa    MW: 53500.9 Da    PI: 6.1523
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05355.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-11124180155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc05355.1.g00050.1.am.mk 124 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 180
                                   57*******************5444.2455536655.779999**************98 PP
2AP232.12.9e-102753161155
                           AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Zmw_sc05355.1.g00050.1.am.mk 275 EHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 316
                                   37******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.13E-18124190No hitNo description
SuperFamilySSF541713.4E-15124190IPR016177DNA-binding domain
PfamPF008473.5E-9124180IPR001471AP2/ERF domain
SMARTSM003802.5E-23125194IPR001471AP2/ERF domain
PROSITE profilePS5103217.477125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-12125189IPR001471AP2/ERF domain
PRINTSPR003676.1E-5126137IPR001471AP2/ERF domain
PRINTSPR003676.1E-5170190IPR001471AP2/ERF domain
PROSITE profilePS5103216.529264324IPR001471AP2/ERF domain
SMARTSM003806.6E-24272330IPR001471AP2/ERF domain
CDDcd000181.25E-18272326No hitNo description
Gene3DG3DSA:3.30.730.105.9E-15272325IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-14273326IPR016177DNA-binding domain
PfamPF008472.6E-5275316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDMDMSSTTY AHHWLSSLSN NHHHGLLQAF SNSSAPQLGG AEETPKMEDF LGGVGGTGAP  60
QAASGEDQPG GGELGSIAAG FLRQYSASGT AENPAGAVTI AMGTEVAESD QARRPAETFG  120
QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA YDLAALKYWG  180
PTTTTNFPVS NYEKELEEMK SMTRQEFIAS LRRAGGSPPR VLFHVHTSPD ACGTVCVCRR  240
PADLRSHVDL FVFLPFCQEE QWILTRSLYL QRSHEHGRWQ ARIGRVAGNK DLYLGTFSTQ  300
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV DSILNSDLPV GGAAAGRASK FPSDSLGPAD  360
AGAMLTGQAW PPSEKDYWSL LALHYQQQQQ VQQQYPASAY EAYGSGVNVD FTMGTSSHSG  420
GVMWGATDGA MGQQDGSGNN KQQSNSYVSN IPYSAPVAIT AAGYQGSTGN NGTWVTSTTS  480
TAPQFYNYLF GME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965682.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-103AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5V5G50.0A0A1E5V5G5_9POAL; AP2-like ethylene-responsive transcription factor AIL5
STRINGSi008325m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]