PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05346.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 347aa MW: 37238.1 Da PI: 6.8059

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05346.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.1	8e-10	53	90	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Zmw_sc05346.1.g00070.1.am.mk 53 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 90 664459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.969	31	94	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	34	98	IPR001356	Homeobox domain
CDD	cd00086	8.04E-14	34	95	No hit	No description
SuperFamily	SSF46689	1.5E-17	35	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-29	37	100	IPR009057	Homeodomain-like
Pfam	PF05920	1.1E-18	51	90	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
AGGRTVGSRL RFIDHQLRQQ RALQQLGMMQ GGAWRPQRGL PERSVSILRA WLFEHFLHPY 60 PKDSDKIMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEETKDRDAA AGGNDEGKSG 120 GGGKSGNVDD NGGVDATPRP DREAAKGVHG SSLLELARDQ QTVHAGFYYG DEEDEDGAAD 180 AMHRRLKKAR GEESAATAAP AAGTFHHHVH DMAALHAQAA AAARQQHEEV SHRELLMKFM 240 ESGGAGATRD HQHHQDGGYS LFAQAAPYGQ FSTEPFAFAR NGGVSLTLGL PHGAGAGAGG 300 SADQTASFLM GSSTAGDSAS HDAAGGYDMN MQSTKSFAAQ LMRDFVA

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

AGGRTVGSRL RFIDHQLRQQ RALQQLGMMQ GGAWRPQRGL PERSVSILRA WLFEHFLHPY  60
PKDSDKIMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEETKDRDAA AGGNDEGKSG  120
GGGKSGNVDD NGGVDATPRP DREAAKGVHG SSLLELARDQ QTVHAGFYYG DEEDEDGAAD  180
AMHRRLKKAR GEESAATAAP AAGTFHHHVH DMAALHAQAA AAARQQHEEV SHRELLMKFM  240
ESGGAGATRD HQHHQDGGYS LFAQAAPYGQ FSTEPFAFAR NGGVSLTLGL PHGAGAGAGG  300
SADQTASFLM GSSTAGDSAS HDAAGGYDMN MQSTKSFAAQ LMRDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-17	40	98	5	63	Homeobox protein Meis2
4xrm_B	1e-17	40	98	5	63	Homeobox protein Meis2
5bng_A	8e-18	40	98	1	59	Homeobox protein Meis2
5bng_B	8e-18	40	98	1	59	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827941.1	1e-157	BEL1-like homeodomain protein 1
Refseq	XP_025827942.1	1e-157	BEL1-like homeodomain protein 1
Refseq	XP_025827943.1	1e-157	BEL1-like homeodomain protein 1
Refseq	XP_025827944.1	1e-157	BEL1-like homeodomain protein 1
TrEMBL	A0A2S3ICH1	1e-155	A0A2S3ICH1_9POAL; Uncharacterized protein
STRING	GRMZM2G458728_P04	1e-148	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4816	37	58