PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05319.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 519aa    MW: 57280.8 Da    PI: 10.4336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05319.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20151244191
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   ffkvl   +   ++rl +p +f++++        ++ k+ s+  tle +sgr+W++ +  r++ +++++t+GW++Fv+++ 
  Zmw_sc05319.1.g00040.1.am.mk 151 FFKVL---MGDFRKRLKIPPSFCKHIpweasrraKSLKQASMAATLEGPSGRTWRMVI--RRSAEGTFFTAGWSKFVRDQA 226
                                   66666...5566778********888*****9996666799*****************..********************* PP

                                   --TT-EEEEEE-SSSEE. CS
                            B3  74 LkegDfvvFkldgrsefe 91 
                                   L+e +f+vF++dg+++f+
  Zmw_sc05319.1.g00040.1.am.mk 227 LRELEFLVFRYDGNTRFT 244
                                   ************998884 PP

2B351.81.5e-16418504598
                                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                   +++ +v  s ++++p  f ++h   ++e ++++l+d+sg+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+
  Zmw_sc05319.1.g00040.1.am.mk 418 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPSGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELV 493
                                   67788999999********9995..345679***************4.444455..9**********************99 PP

                                   SSSEE..EEEEE- CS
                            B3  86 grsefelvvkvfr 98 
                                      ef  +v++fr
  Zmw_sc05319.1.g00040.1.am.mk 494 AAAEF--RVHIFR 504
                                   86666..999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-21146253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-22147255IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929148251IPR003340B3 DNA binding domain
CDDcd100177.37E-19149244No hitNo description
PfamPF023627.5E-18151245IPR003340B3 DNA binding domain
SMARTSM010197.0E-13151251IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-23407504IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-21407504IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-24412504No hitNo description
PROSITE profilePS5086313.958414506IPR003340B3 DNA binding domain
SMARTSM010191.8E-9414506IPR003340B3 DNA binding domain
PfamPF023622.3E-15417504IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGKRRDTVVG AGRVALLEMA PGPIAFPPEN EQEPRGLARS EVRAVDVPPN PWAFGRGLVS  60
VATTRNSLPF APPSKAELYP RFFSPVGSRL FRLSSFLAEL AGFAAPQAPE AGAASPGIPV  120
FRCLLPQPRA CDQGVVQAGS PWASGERRPH FFKVLMGDFR KRLKIPPSFC KHIPWEASRR  180
AKSLKQASMA ATLEGPSGRT WRMVIRRSAE GTFFTAGWSK FVRDQALREL EFLVFRYDGN  240
TRFTAMAFGT SGCEREDLML AAPRPPGRKR GRPSAASRGV ARAAKKNKES VGMELVPYRA  300
PSAGPSDHTC SEDTPELAVG PVKTEVPDAD ELALCVAIPA PPSAARGPGA HQVDLAHAAK  360
TRSIHDDLTA LEDDIPESVR RYKGYVSRRR PVTGAERQRA MELAYAFRSS LPYCVMRMST  420
MHVYYSFMMR FPTGFSRQHL PRERTDVVLR DPSGKAWVVL YIPNTRDRLS RGWCAFARGN  480
CLEEGDYCVF ELVAAAEFRV HIFRVVEPPV PAVRLRSSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969798.10.0B3 domain-containing protein Os01g0723500 isoform X1
SwissprotQ8S2E61e-179Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLC5XIE60.0C5XIE6_SORBI; Uncharacterized protein
STRINGSb03g033260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135