PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05300.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 24860.4 Da PI: 4.9586 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23.9 | 8.6e-08 | 6 | 38 | 18 | 50 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllska 50 ++++P rikki++adedv +i+ +Pvl+ a Zmw_sc05300.1.g00050.1.sm.mkhc 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVKAA 38 5789***********************997544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.1E-10 | 3 | 38 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.15E-5 | 4 | 38 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-5 | 8 | 37 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVKAAED GSEADLKRTR NESENHTGNR 60 RGRGRGRGRG RRGGRGGRGA GKELYITHAK FNDQSSKPAD PKFEVAEEVL SATEAKEATT 120 ESSGRACLRN FDLNLDAAEE DEATVPSQTQ STDLTTSLAA ATSGPSVPQL NEGAATAGLS 180 APRSNEVPKL KDFLEWQLPD MNNMTMDPVQ YALSTNHTSE ADEDYDNEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 69 | RGRGRGRGRG |
2 | 60 | 70 | RGRGRGRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961645.1 | 1e-40 | dr1-associated corepressor isoform X1 | ||||
Refseq | XP_004961646.1 | 5e-41 | dr1-associated corepressor isoform X2 | ||||
Refseq | XP_022681105.1 | 6e-41 | dr1-associated corepressor isoform X3 | ||||
TrEMBL | A0A0A9G083 | 2e-45 | A0A0A9G083_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J02260.1.p | 1e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |