PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05297.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24224.7 Da    PI: 6.7421
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05297.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-23958150
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  kri+n ++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  Zmw_sc05297.1.g00070.1.sm.mk  9 KRIDNPTQRQSTFYKRRDGLFKKARELSVLCDIDLLLLLFSASGKLYQYL 58
                                  79**********************************************96 PP
2K-box22.64.5e-09981811598
                         K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                                   ++ + el+++ +    L+re+R +  +d e+ ++  L+ Le++Le ++ k+R  K++ +  +i++lq+  k  qee   L 
  Zmw_sc05297.1.g00070.1.sm.mk  98 QERRAELDQVGQMCALLERELRFMTLQDGEQYTVPSLELLEHNLEAAMYKVRCEKDRKIGGEISYLQNIIKGRQEERYGLC 178
                                   67788999999*********************************************************9999999998887 PP

                         K-box  96 kkl 98 
                                    kl
  Zmw_sc05297.1.g00070.1.sm.mk 179 DKL 181
                                   776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.118161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-28289IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.99297187IPR002487Transcription factor, K-box
PfamPF014862.0E-1198181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELSVLCD IDLLLLLFSA SGKLYQYLSP  60
TVPSVKELVE RYEAATHTKV WTDIQQTFWW LTEDACGQER RAELDQVGQM CALLERELRF  120
MTLQDGEQYT VPSLELLEHN LEAAMYKVRC EKDRKIGGEI SYLQNIIKGR QEERYGLCDK  180
LAHSQTLKDG EGGSSCEISG LDLKLGRSCT C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15188188MEF2 CHIMERA
6byy_B3e-15188188MEF2 CHIMERA
6byy_C3e-15188188MEF2 CHIMERA
6byy_D3e-15188188MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644649.11e-111PREDICTED: MADS-box transcription factor 32 isoform X1
RefseqXP_015693732.11e-111PREDICTED: MADS-box transcription factor 32 isoform X2
SwissprotQ8S1511e-109MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLJ3L3N91e-110J3L3N9_ORYBR; Uncharacterized protein
STRINGOB01G38450.11e-111(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]