PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05278.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 177aa MW: 19956.6 Da PI: 8.7748 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.4e-19 | 87 | 142 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++++t+eq+++Le Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa+++ Zmw_sc05278.1.g00010.1.am.mk 87 RTKRRLTAEQVQALEVSFEEeKRKLEPERKNELARRLGIAPRQVAVWFQNRRARWR 142 77889**************98**********************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9.3e-38 | 88 | 176 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 krrl++eqv++LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d+l + +++L Zmw_sc05278.1.g00010.1.am.mk 88 TKRRLTAEQVQALEVSFEEEKrKLEPERKNELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDELLAGRDALV 168 69****************9999*********************************************************** PP HD-ZIP_I/II 82 keveeLre 89 +++++Lr+ Zmw_sc05278.1.g00010.1.am.mk 169 ADNDRLRS 176 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.41E-17 | 77 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.783 | 83 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-16 | 85 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.89E-15 | 87 | 145 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 87 | 142 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 93 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-6 | 115 | 124 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-6 | 124 | 140 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.7E-10 | 144 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDSGRLMISS AAAPFCSALA GGSQVLQFGG GFRGGTSMAA AVAENGRRKR PFFTPHEALQ 60 LELGLDIMDN VDQLCGFEYE LQGAPERTKR RLTAEQVQAL EVSFEEEKRK LEPERKNELA 120 RRLGIAPRQV AVWFQNRRAR WRTKQLEQDF DRLRAAHDEL LAGRDALVAD NDRLRSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804293.1 | 8e-68 | homeobox-leucine zipper protein HOX25-like | ||||
Swissprot | A3BYC1 | 4e-51 | HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25 | ||||
TrEMBL | A0A2T7ERW1 | 2e-68 | A0A2T7ERW1_9POAL; Uncharacterized protein | ||||
STRING | MLOC_65462.1 | 1e-60 | (Hordeum vulgare) | ||||
STRING | Sb02g023650.1 | 5e-60 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12756 | 27 | 35 |