PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05273.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 521aa    MW: 56908.9 Da    PI: 5.8245
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05273.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.19.3e-139573787
                        trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                    k+++ g+ rs+k+Ckek+en+ k+y+++ke + +r++++s  +++f++lea
  Zmw_sc05273.1.g00080.1.sm.mkhc  9 KLAALGYVRSAKKCKEKFENVDKYYRRTKEARAGRQDGKS--YRFFSELEA 57
                                    67899*****************************866665..******985 PP
2trihelix107.68.3e-34283368187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+k+ev+aLi++r+e++e+  ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tc
  Zmw_sc05273.1.g00080.1.sm.mkhc 283 RWPKEEVQALIRLRTEKDEQCHDTGSKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PQDSKTC 360
                                     8********************************************************************97.9****** PP

                        trihelix  80 pyfdqlea 87 
                                     pyf+ql+a
  Zmw_sc05273.1.g00080.1.sm.mkhc 361 PYFHQLDA 368
                                     ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-9858No hitNo description
SMARTSM007173.0E-5280342IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-5281339IPR009057Homeodomain-like
PROSITE profilePS500907.898282340IPR017877Myb-like domain
SuperFamilySSF466892.74E-5282352IPR009057Homeodomain-like
PfamPF138372.8E-22282369No hitNo description
CDDcd122032.31E-27283347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAAAAALQKL AALGYVRSAK KCKEKFENVD KYYRRTKEAR AGRQDGKSYR FFSELEALHA  60
AAPQQRRQQA SGQADPQPSA PMSWTTAPAA LEPPGAGTPE LSFSSMSGSE SESDDDEFDV  120
DGAEDHGKGD GDAAVCDKEM MALFEGMMRQ VTEKQDAMQR VFLDTLERWE AERTAREEAW  180
RRQEVARMNR EREQLAKERA SAASRDAALI AFLQRVGGGG QPVRLPPPSA VAVPTPMPDR  240
APPSPRQDAA NTSPLQVVSV PSKPEESWAW AGGESSGGST SSRWPKEEVQ ALIRLRTEKD  300
EQCHDTGSKG PLWEDIAAGM RRIGYNRSAK RCKEKWENIN KYFKKVKESN KRRPQDSKTC  360
PYFHQLDAMY RKKRFAGRPG SGAASEAHLS TVTASSQTSP SQRELEGKSS NDAGKQNIIG  420
AANVHALPSE MASAATILGD GAKNKKPEDT ETETNMQLQQ QHEFAADETD SDDMVMEGLY  480
TDEGNDGDRM QYKTGSSGNT PAPTETAAAA TSSASTFLAV Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3L6QGT40.0A0A3L6QGT4_PANMI; Trihelix transcription factor GTL1-like isoform X1
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175