PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05271.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 573aa MW: 62295.9 Da PI: 9.0781

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05271.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.4e-13	23	65	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l++ + + G++ W+ Ia++++ gRt++++k++w++ Zmw_sc05271.1.g00010.1.am.mk 23 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 65 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.298	1	16	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.9E-10	2	28	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.52E-21	3	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.497	17	71	IPR017930	Myb domain
SMART	SM00717	2.6E-12	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-12	23	65	IPR001005	SANT/Myb domain
CDD	cd00167	8.74E-10	25	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-18	29	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
LKRCGKSCRL RWVNYLRPEL RHGGFTDEED NLILSLYGEI GSKWSVIASR LPGRTDNDVK 60 NYWNTKLKKR FFAAADRKGT LPPPPPPPPP PISRGDDGTA AVATESEPEY DRAPPDPSPT 120 TPSLANLDAA VVDNDDELLV KSEQLYSELM GLIEQQSAET SAMESLFTAT SSTGTTPAVS 180 SSSGSCNVWP AKDVQDSGLL SESISGLFDG DDVFGAADLM PAYSFQELLA ASSYDEFTTK 240 KARNRPRAGD LLKEHAPLHA CCHAQAAIEG IGRPPPMFSA RRRRAERIAR ATAHRPRARQ 300 GAPGASETHA TPCPRRPSVV QVFLTSDHDE QRGARPGLLG ARTKMWPERA RHGGEDLGLS 360 SGPNQSNTYP GPNRVKTCLL QLCSGQPIRR KNIRDVRLKS PARRAARGRN LACEPGVDFC 420 RAESPRHRTD SPRAVMRSRV ELVDGAEPCT AERVMTWLPF TPSSPASRHG WVFAVDRSLV 480 DAEGKRRRRA VPVEGGAAAG NGGFVRAPSK PTNHSKPAVG RAYKCMIGGG AGAAGSGKGR 540 SKFKHDEVKT YYQEIDEAYY DAAVDAVLEY LDY

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

LKRCGKSCRL RWVNYLRPEL RHGGFTDEED NLILSLYGEI GSKWSVIASR LPGRTDNDVK  60
NYWNTKLKKR FFAAADRKGT LPPPPPPPPP PISRGDDGTA AVATESEPEY DRAPPDPSPT  120
TPSLANLDAA VVDNDDELLV KSEQLYSELM GLIEQQSAET SAMESLFTAT SSTGTTPAVS  180
SSSGSCNVWP AKDVQDSGLL SESISGLFDG DDVFGAADLM PAYSFQELLA ASSYDEFTTK  240
KARNRPRAGD LLKEHAPLHA CCHAQAAIEG IGRPPPMFSA RRRRAERIAR ATAHRPRARQ  300
GAPGASETHA TPCPRRPSVV QVFLTSDHDE QRGARPGLLG ARTKMWPERA RHGGEDLGLS  360
SGPNQSNTYP GPNRVKTCLL QLCSGQPIRR KNIRDVRLKS PARRAARGRN LACEPGVDFC  420
RAESPRHRTD SPRAVMRSRV ELVDGAEPCT AERVMTWLPF TPSSPASRHG WVFAVDRSLV  480
DAEGKRRRRA VPVEGGAAAG NGGFVRAPSK PTNHSKPAVG RAYKCMIGGG AGAAGSGKGR  540
SKFKHDEVKT YYQEIDEAYY DAAVDAVLEY LDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-18	3	70	40	107	B-MYB