PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05267.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 554aa MW: 60979.9 Da PI: 10.0823

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05267.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	222	258	9	47
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 de+++ a+ ++G + Wk+I + + ++t+ q++s+ qky Zmw_sc05267.1.g00070.1.am.mk 222 DEQIAVAFFRFGRD-WKKIEEQVR-TKTAVQIRSHAQKY 258 89999999**77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-5	185	265	IPR009057	Homeodomain-like
CDD	cd00167	8.95E-4	218	259	No hit	No description
SuperFamily	SSF46689	1.33E-7	220	264	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-7	222	258	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCPNSQTT RPVRIRTQPG THALLSPREP 60 ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP 120 APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK 180 PYTITKPRER WSTEEHGRFL DALLIQDLSR IEIRFGGSVE RDEQIAVAFF RFGRDWKKIE 240 EQVRTKTAVQ IRSHAQKYFI KVQKLGLAAG LPPQYPRRRF VMHQQQQQGS TSTAGSSAAA 300 VPVLQGQPHG APVAVPMPGP SCDGVVVHGS LGWDCAGILP STAGAPGTSA WVNTDGHGQI 360 APPASLIGAP SFSDATVDWA GSSSSEPLAS GDAQDEFIQL PLSPDDLNFA RVYRFVGDMF 420 DPNTVCQVDS HLQRLKGMDD ITVKTILLVL RNLETNLSAP QFEPVVSSST PLNRARDKGF 480 FRWNSTGTSF RRSANLMQRG WPNSSARNSC CTCSSAEARG ARYTRTRTYM ITTTPTRLRT 540 QAWLASGRMQ TSSR

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCPNSQTT RPVRIRTQPG THALLSPREP  60
ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP  120
APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK  180
PYTITKPRER WSTEEHGRFL DALLIQDLSR IEIRFGGSVE RDEQIAVAFF RFGRDWKKIE  240
EQVRTKTAVQ IRSHAQKYFI KVQKLGLAAG LPPQYPRRRF VMHQQQQQGS TSTAGSSAAA  300
VPVLQGQPHG APVAVPMPGP SCDGVVVHGS LGWDCAGILP STAGAPGTSA WVNTDGHGQI  360
APPASLIGAP SFSDATVDWA GSSSSEPLAS GDAQDEFIQL PLSPDDLNFA RVYRFVGDMF  420
DPNTVCQVDS HLQRLKGMDD ITVKTILLVL RNLETNLSAP QFEPVVSSST PLNRARDKGF  480
FRWNSTGTSF RRSANLMQRG WPNSSARNSC CTCSSAEARG ARYTRTRTYM ITTTPTRLRT  540
QAWLASGRMQ TSSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819438.1	1e-109	protein REVEILLE 8-like isoform X1
TrEMBL	A0A2T7DRB8	1e-114	A0A2T7DRB8_9POAL; Uncharacterized protein
STRING	ORGLA01G0032300.1	7e-99	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70