PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05262.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 639aa    MW: 71703.9 Da    PI: 10.1622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05262.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-11348382136
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                                   +g+WT+eEde+lv  v+++G g+W++ +++ g  Rt
  Zmw_sc05262.1.g00030.1.am.mk 348 KGPWTPEEDEILVAHVQRFGHGNWRALPKRAG-ERT 382
                                   79******************************.898 PP
2Myb_DNA-binding41.92.3e-13431482148
                                   TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+ E++ +++++++lG++      W++Ia++++ gRt++++k+ w+++l
  Zmw_sc05262.1.g00030.1.am.mk 431 RGNFTKAEEDTIIHLHELLGNRyscssPWSAIAARLP-GRTDNEIKNVWHTHL 482
                                   89***********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.406343390IPR017930Myb domain
SuperFamilySSF466892.37E-9344384IPR009057Homeodomain-like
SMARTSM007171.2E-10347427IPR001005SANT/Myb domain
PfamPF002497.3E-9348382IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-22349382IPR009057Homeodomain-like
CDDcd001671.95E-7350425No hitNo description
SuperFamilySSF466893.29E-18412488IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-22414432IPR009057Homeodomain-like
PROSITE profilePS5129419.641426486IPR017930Myb domain
SMARTSM007172.4E-9430484IPR001005SANT/Myb domain
PfamPF002494.5E-12431482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-22433486IPR009057Homeodomain-like
CDDcd001677.45E-8433482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MVLEQSASGE DALRGWLVSA FASEMEKSSA GSREAALNEA YEKMERVFPT FVSEVRGRGW  60
YTDQFLDGNG IPRTTHERMN WETGCTNRSC DTAAAQNDRD RQIRRRKRWP GCDRDSQRWK  120
TATFFGDAQK AVEVQRPLAF HIWERPDSGD ERQTEESCPC LVRGDVRLAR TRRNEAPTGR  180
RPSGLPRERP ETLCTHGRRP VVVGGFLIKQ RRALVSHYTR AALENPRRLL IETNSGAADR  240
LTLRAGYYRW VLRASVSACT RVRTCALSRD EPARKRARMW TMRTCVSAPG SSKELRRINT  300
RPDALATPLL VRTTRRTSDE CSLPQRRSLL RTRQARAQAE LQIMGLKKGP WTPEEDEILV  360
AHVQRFGHGN WRALPKRAGE RTQPRLHRLH FSGLAGRRGV LNDEGCVAGL LRCGKSCRLR  420
WINYLRPDIK RGNFTKAEED TIIHLHELLG NRYSCSSPWS AIAARLPGRT DNEIKNVWHT  480
HLKKRLDPTK QDHHAAPAVG AGSKKKRKPA AAAPKRGGAR KASEEVPGLP ATAAPVSLKR  540
SAVSSSVTES TSMTEQGNTG TSGGFARDES FTSSSEEEFQ IDESFWSETL SMPLESFDVP  600
MDSFDVVPVA SSSSGGADDM DYWLGVFMEI DDVQELPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-203434872109B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1503508KKKRKP