PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05221.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 485aa MW: 53124.4 Da PI: 6.7895

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05221.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.1e-19	231	280	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++a +++++g Zmw_sc05221.1.g00070.1.am.mkhc 231 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 280 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.3E-36	231	294	IPR001471	AP2/ERF domain
CDD	cd00018	1.17E-31	231	290	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.0E-31	231	289	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-21	231	289	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.709	231	288	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-11	232	280	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-10	232	243	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-10	254	270	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MHLMTVNCHH PVPSPSQPSS LLVVPCTDAL ADVGTPPRVP APTRLHRAPH SQPYKTARPS 60 LAARHCLVRP GKKKGSFTIP NPFAFPIHTR FPLLPFLRGG CGGARGADRT MCGGAILANL 120 TKHPEPRRRL TEGALWPEKK KPKRGGAGGR RQYPAGFVEE DDEDFEADFE EFEGDSGESD 180 LELGQGEDDD VVEIKPFAAK RNFTRDGLST MTTANFDGPA ARSAKRKRKN QYRGIRQRPW 240 GKWAAEIRDP RKGVRVWLGT YNSPEEAARA YDAEARRIRG KKAKVNFPDT PTGVQKRRAS 300 PAAARAPKSS FEQKPAVKAA MNNPINTNGS CCPSADYTSN KQVVQLDDLT FSPAINSPAP 360 NEDPIMNLHS DQGSNSFSYS DFGWENDTKT PDITSITPVS TIAEGDESEF VNKNSNGSLV 420 PPVMDNNPVD LTDGLTDLEP YMRFILDGGA SESIDSLLNL DGSQDVLSNM DLWSFDDMPI 480 SGDFY

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MHLMTVNCHH PVPSPSQPSS LLVVPCTDAL ADVGTPPRVP APTRLHRAPH SQPYKTARPS  60
LAARHCLVRP GKKKGSFTIP NPFAFPIHTR FPLLPFLRGG CGGARGADRT MCGGAILANL  120
TKHPEPRRRL TEGALWPEKK KPKRGGAGGR RQYPAGFVEE DDEDFEADFE EFEGDSGESD  180
LELGQGEDDD VVEIKPFAAK RNFTRDGLST MTTANFDGPA ARSAKRKRKN QYRGIRQRPW  240
GKWAAEIRDP RKGVRVWLGT YNSPEEAARA YDAEARRIRG KKAKVNFPDT PTGVQKRRAS  300
PAAARAPKSS FEQKPAVKAA MNNPINTNGS CCPSADYTSN KQVVQLDDLT FSPAINSPAP  360
NEDPIMNLHS DQGSNSFSYS DFGWENDTKT PDITSITPVS TIAEGDESEF VNKNSNGSLV  420
PPVMDNNPVD LTDGLTDLEP YMRFILDGGA SESIDSLLNL DGSQDVLSNM DLWSFDDMPI  480
SGDFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-18	230	288	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	3e-18	231	288	5	63	ATERF1
3gcc_A	3e-18	231	288	5	63	ATERF1
5wx9_A	5e-18	231	288	14	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816350.1	0.0	ethylene-responsive transcription factor 1
Swissprot	Q6K7E6	1e-164	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A3L6RNH8	0.0	A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRING	Pavir.Aa00281.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1039	38	134

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]