PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05210.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 380aa MW: 41439.8 Da PI: 7.1702

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05210.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.8	4e-12	83	114	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 +++k+ rr+++NReAAr+sR+RKka+i+ Le Zmw_sc05210.1.g00020.1.sm.mkhc 83 PSDKALRRLAQNREAARKSRLRKKAYIQALES 114 589***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-5	82	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-7	83	119	No hit	No description
Pfam	PF00170	7.2E-9	84	114	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.49E-6	86	119	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.8E-27	172	244	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
YDRRARQQPF PAWAGEPPFR ADSVAAQAVA TGAPPPAAVV GFVEPEVKFV SRVAVAEDDA 60 PLADSPGPPS SDSFGHDRDD AGPSDKALRR LAQNREAARK SRLRKKAYIQ ALESSRLKLA 120 WMEQELAAVR RPQGAFVGGS VGESAPTLVD SGVAAFEMEY ARWMEEQARQ AGELRAALQS 180 DASELHLRVL VDAGLAHYDA LFGAKSAAAR RDAFFVLSGA WRAPTERFFH WIGGFRPSEV 240 LKTLEPQLEP LAEQQREEVR ALQQTARQLE DALSQGLDKL QQTLTEALLA TTTAIDAPHD 300 GGGGYANVPP QQQMAGVLGR LDGLPGFVDQ ADHMRQQTLR NMRKILAPRQ AARGLLALAD 360 YCQRLRALSS LWAVRPREPA

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

YDRRARQQPF PAWAGEPPFR ADSVAAQAVA TGAPPPAAVV GFVEPEVKFV SRVAVAEDDA  60
PLADSPGPPS SDSFGHDRDD AGPSDKALRR LAQNREAARK SRLRKKAYIQ ALESSRLKLA  120
WMEQELAAVR RPQGAFVGGS VGESAPTLVD SGVAAFEMEY ARWMEEQARQ AGELRAALQS  180
DASELHLRVL VDAGLAHYDA LFGAKSAAAR RDAFFVLSGA WRAPTERFFH WIGGFRPSEV  240
LKTLEPQLEP LAEQQREEVR ALQQTARQLE DALSQGLDKL QQTLTEALLA TTTAIDAPHD  300
GGGGYANVPP QQQMAGVLGR LDGLPGFVDQ ADHMRQQTLR NMRKILAPRQ AARGLLALAD  360
YCQRLRALSS LWAVRPREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820316.1	1e-140	transcription factor TGA2.3-like isoform X2
Swissprot	Q93ZE2	1e-108	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0A9HNG7	1e-149	A0A0A9HNG7_ARUDO; Uncharacterized protein
STRING	Sb07g004900.1	1e-136	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]