PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05209.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 872aa MW: 91204.8 Da PI: 10.3575

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05209.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	4.9e-09	205	247	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 W++eEd l+ +v+++G g+W+ I + + ++Rt q+ rw Zmw_sc05209.1.g00040.1.sm.mkhc 205 WSKEEDADLAAGVQKYGEGNWEIILDKCNfrTTRTSDQLSQRW 247 *****************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-10	197	249	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.382	197	256	IPR017930	Myb domain
SuperFamily	SSF46689	1.15E-11	200	253	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-5	201	253	IPR001005	SANT/Myb domain
CDD	cd11660	2.40E-16	203	252	No hit	No description
Pfam	PF00249	2.6E-7	205	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MAAAPAAGMG KGKRKRPLSE DDVYLLLHRY TPATILTALQ EVAQHAKGRR IDWKALVGKS 60 TTGITSPREY QMLWRHFAYH HDLAESVDAS SSPLDDDSDL ECELEPIPNP SKDALSEASS 120 LAKILIYGSS REQASGHRVN MEVLQNSANE KIVQVPSDKQ LSQSQRLTTV MGLASNSKQA 180 SQTGPSPDPS DANGASKKKR KIKMWSKEED ADLAAGVQKY GEGNWEIILD KCNFRTTRTS 240 DQLSQRWALI SKRPGSSKPG TAKQVSITTS EERMATRKAL SLAVDYNPCT RKLSAARSGA 300 QQFSGQHNST VFGAAIPEVK SVAAPFAAPR QAPVPAPMQM PVTMPLPVTV QVQAPLPQGQ 360 QAPPQAPPPK APNASNKTRN NSKKQTVPQN PAMISSSIQA VAIAAGGRIA TPTAAANHLK 420 ATQSKNAVHI RTRVTVSSTS SAGSKESNIV LEPRTQLGGV ELLELPNTVA SVSAPSILPT 480 HATQQILDVS AADPPGPSSG EHFVDTKKAL NASAVSASCN SWEQDDDSTF CIVTMADLFP 540 VDANESESIN PKEKQPEAIG PKEKQQDSVD LREKQLVSLG PKTKKPGTTN PKIEGIIDSK 600 DADMLEFDQF VASQRGASVS MDYLDTSNSV RSAPSTQGSA GSQNKQLKSV PTAGRSNSLC 660 AGTSTFGKKT KSPVPHPVTL VPTGTPRVNV LALSSAKNKT VVRKAATPTT AGGQNLLMQK 720 QALNTKGNQI PNSVAVSVTS VVPGSSPAST LVNAASKVNP PISSPASTVV DAAGKMNPPG 780 SSQASTVVNA VGKANPPGRT PASPVIIALG KVNPPGNSQA STVVNGTSKA NPAGSGKTST 840 MVNGGSKVNP LRSSQASKVV SGVTKANPLA SQ

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MAAAPAAGMG KGKRKRPLSE DDVYLLLHRY TPATILTALQ EVAQHAKGRR IDWKALVGKS  60
TTGITSPREY QMLWRHFAYH HDLAESVDAS SSPLDDDSDL ECELEPIPNP SKDALSEASS  120
LAKILIYGSS REQASGHRVN MEVLQNSANE KIVQVPSDKQ LSQSQRLTTV MGLASNSKQA  180
SQTGPSPDPS DANGASKKKR KIKMWSKEED ADLAAGVQKY GEGNWEIILD KCNFRTTRTS  240
DQLSQRWALI SKRPGSSKPG TAKQVSITTS EERMATRKAL SLAVDYNPCT RKLSAARSGA  300
QQFSGQHNST VFGAAIPEVK SVAAPFAAPR QAPVPAPMQM PVTMPLPVTV QVQAPLPQGQ  360
QAPPQAPPPK APNASNKTRN NSKKQTVPQN PAMISSSIQA VAIAAGGRIA TPTAAANHLK  420
ATQSKNAVHI RTRVTVSSTS SAGSKESNIV LEPRTQLGGV ELLELPNTVA SVSAPSILPT  480
HATQQILDVS AADPPGPSSG EHFVDTKKAL NASAVSASCN SWEQDDDSTF CIVTMADLFP  540
VDANESESIN PKEKQPEAIG PKEKQQDSVD LREKQLVSLG PKTKKPGTTN PKIEGIIDSK  600
DADMLEFDQF VASQRGASVS MDYLDTSNSV RSAPSTQGSA GSQNKQLKSV PTAGRSNSLC  660
AGTSTFGKKT KSPVPHPVTL VPTGTPRVNV LALSSAKNKT VVRKAATPTT AGGQNLLMQK  720
QALNTKGNQI PNSVAVSVTS VVPGSSPAST LVNAASKVNP PISSPASTVV DAAGKMNPPG  780
SSQASTVVNA VGKANPPGRT PASPVIIALG KVNPPGNSQA STVVNGTSKA NPAGSGKTST  840
MVNGGSKVNP LRSSQASKVV SGVTKANPLA SQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952835.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBL	K3YPR8	0.0	K3YPR8_SETIT; Uncharacterized protein
STRING	Si016260m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54