PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05201.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 327aa    MW: 35731.6 Da    PI: 10.3156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05201.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.25.8e-32148245190
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL
  Zmw_sc05201.1.g00030.1.sm.mk 148 FDKTVTPSDVGKLNRLVIPKQHAEKHfplelpsAGGESKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKGL 228
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS.SEE CS
                            B3  75 kegDfvvFkldgr.sef 90 
                                   ++gD+v F+++    ++
  Zmw_sc05201.1.g00030.1.sm.mk 229 NAGDVVGFYRTAAgADT 245
                                   *********76544554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.63570IPR001471AP2/ERF domain
SMARTSM003801.1E-102176IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-102870IPR016177DNA-binding domain
CDDcd000184.12E-132970No hitNo description
Gene3DG3DSA:3.30.730.102.1E-133370IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-40139263IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-29146250No hitNo description
SuperFamilySSF1019361.7E-31146242IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-23148257IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817148253IPR003340B3 DNA binding domain
PfamPF023627.7E-29148249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVVCCWRPQK PRRPPPTKPT RPYNPHLPAH IYERHQRVWL GTFAGEGDAA RAYDVAAQRF  60
RGRDAVTNFR PLADADLDAA AELRFLASRS KAEVVDMLRK HTYFDELAQN RRSFASAPTT  120
SSSLAANNHD SSSSSPSPAS AAAREHLFDK TVTPSDVGKL NRLVIPKQHA EKHFPLELPS  180
AGGESKGVLL NFEDAEGKVW RFRYSYWNSS QSYVLTKGWS RFVKDKGLNA GDVVGFYRTA  240
AGADTKLFIE CKLRPKNGAA VSVAANPVIN VPSSAPVTKA VRLFGVDLLT APAPEAAMGT  300
GCKRARDFAA TPTQAAFKKP LVELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-521422582117B3 domain-containing transcription factor NGA1
5os9_B2e-521422582117B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-152AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-146Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A060CXV81e-147A0A060CXV8_MAIZE; AP2-EREBP transcription factor (Fragment)
TrEMBLA0A1D6NEV81e-147A0A1D6NEV8_MAIZE; DNA-binding protein RAV1
STRINGPavir.Eb02845.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203