PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05174.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 364aa MW: 38789.3 Da PI: 7.0057

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05174.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.4	2.3e-19	284	318	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l Zmw_sc05174.1.g00040.1.am.mk 284 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 318 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	5.8E-18	278	332	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.163	278	314	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	7.13E-14	281	341	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-15	282	316	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.01E-15	283	340	No hit	No description
PROSITE pattern	PS00344	0	284	309	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.6E-17	284	318	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDALKSSAFS PEETAEDAAA ANAALVEREG FSIEDLLDME VFGEPDTDSA DQEDEPPPPA 60 TTAEETEEKS SPGKSQPSSI VTYELPPPPP EMVDLPAHDV EEELEWVSRV IDDSLSEVPP 120 PPQPLAMAAA QAARSPLAHH RLPHDGPYRA VPPAPGPLRT LSTDVLVPVK AKRSKRSPSS 180 AWYVSGASLF SDSTSSSSTA TTSSSSSSSA SFPSFLLDSP LFSSPDFEGY PQFLQPRRKK 240 SKHSTGGKQK PKKRGRKPKH APQLTGTAAA AAAASQVTQG DRRCSHCGVQ KTPQWRAGPE 300 GAKTLCNACG VRFKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE AGLVATAAPA 360 VASF

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDALKSSAFS PEETAEDAAA ANAALVEREG FSIEDLLDME VFGEPDTDSA DQEDEPPPPA  60
TTAEETEEKS SPGKSQPSSI VTYELPPPPP EMVDLPAHDV EEELEWVSRV IDDSLSEVPP  120
PPQPLAMAAA QAARSPLAHH RLPHDGPYRA VPPAPGPLRT LSTDVLVPVK AKRSKRSPSS  180
AWYVSGASLF SDSTSSSSTA TTSSSSSSSA SFPSFLLDSP LFSSPDFEGY PQFLQPRRKK  240
SKHSTGGKQK PKKRGRKPKH APQLTGTAAA AAAASQVTQG DRRCSHCGVQ KTPQWRAGPE  300
GAKTLCNACG VRFKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE AGLVATAAPA  360
VASF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151060.1	1e-130	uncharacterized protein LOC100284693
TrEMBL	B6TWI7	1e-129	B6TWI7_MAIZE; GATA zinc finger family protein
STRING	GRMZM2G404973_P03	1e-126	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1417	33	108