PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05143.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 351aa MW: 38137.8 Da PI: 7.9825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 138 | 185 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl Zmw_sc05143.1.g00060.1.am.mk 138 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 185 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 130 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.045 | 133 | 189 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 137 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-17 | 138 | 185 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.13E-23 | 139 | 212 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.03E-13 | 140 | 185 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 189 | 211 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 50 | 190 | 347 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MVARCAPAGY VANPGTADQR VEAHEYARGE YDGCDHESRR AARTGRAPNA VSICRLRWEV 60 RYAETAHRTD LNGVNGAGAA DWWAKPRASQ GRGRTETQED SRPTLGRHYP SNLTPRSPAG 120 CYRMGRSPCC EKEAGLKKGP WTPEEDQKLL AYIEQHGHGC WRSLPAKAGL RRCGKSCRLR 180 WTNYLRPDIK RGKFTLQEEQ TIIQLHALLG NSLAVPHHPC QGAGPLPPPA CRPAAMLTCS 240 VPSLLPLADR PVLPPVLQAP QSYVDAFGEQ HTQQQDGFLA RAFPDCSVAG AEQGFAATSA 300 GPSAGEQEED KGYWNSILNM VNSSMSTSSS SLISETVTEQ AAYLLAAAAE F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 136 | 214 | 5 | 82 | B-MYB |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691484.1 | 6e-61 | PREDICTED: transcription factor MYB32-like | ||||
TrEMBL | J3LE62 | 5e-61 | J3LE62_ORYBR; Uncharacterized protein | ||||
STRING | Pavir.Aa01543.1.p | 1e-76 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |