PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05143.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 351aa    MW: 38137.8 Da    PI: 7.9825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05143.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-18138185148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zmw_sc05143.1.g00060.1.am.mk 138 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 185
                                   79********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-25130188IPR009057Homeodomain-like
PROSITE profilePS5129425.045133189IPR017930Myb domain
SMARTSM007171.6E-15137187IPR001005SANT/Myb domain
PfamPF002498.2E-17138185IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-23139212IPR009057Homeodomain-like
CDDcd001679.03E-13140185No hitNo description
Gene3DG3DSA:1.10.10.601.1E-7189211IPR009057Homeodomain-like
SMARTSM0071750190347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVARCAPAGY VANPGTADQR VEAHEYARGE YDGCDHESRR AARTGRAPNA VSICRLRWEV  60
RYAETAHRTD LNGVNGAGAA DWWAKPRASQ GRGRTETQED SRPTLGRHYP SNLTPRSPAG  120
CYRMGRSPCC EKEAGLKKGP WTPEEDQKLL AYIEQHGHGC WRSLPAKAGL RRCGKSCRLR  180
WTNYLRPDIK RGKFTLQEEQ TIIQLHALLG NSLAVPHHPC QGAGPLPPPA CRPAAMLTCS  240
VPSLLPLADR PVLPPVLQAP QSYVDAFGEQ HTQQQDGFLA RAFPDCSVAG AEQGFAATSA  300
GPSAGEQEED KGYWNSILNM VNSSMSTSSS SLISETVTEQ AAYLLAAAAE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-15136214582B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691484.16e-61PREDICTED: transcription factor MYB32-like
TrEMBLJ3LE625e-61J3LE62_ORYBR; Uncharacterized protein
STRINGPavir.Aa01543.1.p1e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563