PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05134.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 142aa MW: 15587.9 Da PI: 10.1632 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.1 | 1.6e-20 | 26 | 60 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++ Zmw_sc05134.1.g00060.1.am.mk 26 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 60 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 6.18E-14 | 18 | 59 | No hit | No description |
SMART | SM00401 | 1.3E-18 | 20 | 77 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.231 | 20 | 56 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-16 | 21 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.33E-15 | 25 | 61 | No hit | No description |
Pfam | PF00320 | 2.6E-18 | 26 | 60 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 26 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MELETDPISP SPDDTTAASG GEAKACADCH TTKTPLWRGG PEGPKSLCNA CGIRYRKRRR 60 QALGLDANAE TQDQQPKKKA ASSGKEDKKE KQEVTVELRV VGFGKKVVLK QRRRMRRKKC 120 LSEEERAAVL LMAISSGVIY AS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 59 | RKRRR |
2 | 110 | 116 | QRRRMRR |
3 | 111 | 118 | RRRMRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818098.1 | 2e-61 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 1e-27 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A0A9NUC3 | 4e-76 | A0A0A9NUC3_ARUDO; Uncharacterized protein | ||||
STRING | Si002983m | 4e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Publications ? help Back to Top | |||
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