PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05134.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 142aa    MW: 15587.9 Da    PI: 10.1632
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05134.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.11.6e-202660135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Zmw_sc05134.1.g00060.1.am.mk 26 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 60
                                  ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-141859No hitNo description
SMARTSM004011.3E-182077IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.2312056IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-162161IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.33E-152561No hitNo description
PfamPF003202.6E-182660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MELETDPISP SPDDTTAASG GEAKACADCH TTKTPLWRGG PEGPKSLCNA CGIRYRKRRR  60
QALGLDANAE TQDQQPKKKA ASSGKEDKKE KQEVTVELRV VGFGKKVVLK QRRRMRRKKC  120
LSEEERAAVL LMAISSGVIY AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559RKRRR
2110116QRRRMRR
3111118RRRMRRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.12e-61GATA transcription factor 15-like
SwissprotQ9FJ101e-27GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0A9NUC34e-76A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGSi002983m4e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]