PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05132.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 672aa    MW: 73582.2 Da    PI: 11.2334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05132.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.93.5e-13570635256
                                   T--SS--HHHHHHHHHHHHHSSS--H...........HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsa...........eereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q  +Lee F+++++++            ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Zmw_sc05132.1.g00010.1.am.mk 570 RKKLRLSKDQAAVLEESFKEHNTLNPvrtihsfdsiiKQKAALAKQLNLKPRQVEVWFQNRRARTK 635
                                   788899*************9888874333333333447999***********************98 PP
2HD-ZIP_I/II1093.4e-35570669190
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep...........erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 
                                   +kk+rlsk+q+++LEesF+e+++L+p           ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++
  Zmw_sc05132.1.g00010.1.am.mk 570 RKKLRLSKDQAAVLEESFKEHNTLNPvrtihsfdsiiKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCF 650
                                   69***********************96666666666678****************************************** PP

                   HD-ZIP_I/II  71 dalkeenerLekeveeLree 90 
                                   ++l+een+rL++ev+eLr +
  Zmw_sc05132.1.g00010.1.am.mk 651 ESLTEENRRLQREVAELR-A 669
                                   *****************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.5E-22405539IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.28E-13559638IPR009057Homeodomain-like
PROSITE profilePS5007114.155566637IPR001356Homeobox domain
SMARTSM003891.2E-10568641IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-15570640IPR009057Homeodomain-like
PfamPF000461.5E-10570635IPR001356Homeobox domain
CDDcd000864.13E-13570638No hitNo description
PROSITE patternPS000270612635IPR017970Homeobox, conserved site
PfamPF021831.4E-10637671IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.2E-16637672IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MPAYVERSPH GRTYGAAPHH MGRRDGRSWG SSEQATHAWR AAQRARSGAM QARALFDYVS  60
CLLETSGSVY VLACHAKRYV RVIRRASPSG RVVHVPTHNS TDPHHHSIGR QVRACLAVRT  120
HAAVSCNAPS TTPASACRRP SRPAVSPHRR PRAACCPHLL HAHGSAVMCC LACRTRTIEN  180
PIRGNQDPGF ILCSDMEKQA PAPGGKNVND WGGRMLSAPR RAGRAPPAHV TLPAFPGPAP  240
RDAVPLACLS LPLWPRYISW SRSTRSGRNH QARRRHRSWR SKSYRYHKPP YPCRVPLPSP  300
TPSRVHQSSS VRQEPRRSGA RVRQNWRSSK HRHHGVMIPG GRAAVGGTSQ TAKRYLDDEA  360
GGHATAKLTQ LVDVLRSSRY STPPPPFLLI ACHTPRGEEQ YHNLGLGLSL SLGIATAAAP  420
VEPPPQQPQH QQKSALSVAP VPAQQPRQCC NGFSAGFFFS PSTGIDRSLF ERKPQQQQAA  480
PTPAAACHGH EMPFLRGIDV NRAPAGEISR RGSCSEDEEP GASSPNSTLS RLSGKRGAPA  540
RSGGGEGDRT PRAGGGGSDD EDSGAGGGSR KKLRLSKDQA AVLEESFKEH NTLNPVRTIH  600
SFDSIIKQKA ALAKQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFLKRCF ESLTEENRRL  660
QREVAELRAL KL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1568574SRKKLRL
2629637RRARTKLKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889