PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05128.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 1244aa MW: 134627 Da PI: 9.9119 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.9e-18 | 110 | 144 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt+Tp+WR+gp+g+ tLCnaCGl+y +k++ Zmw_sc05128.1.g00010.1.am.mk 110 CTHCSTTETPQWREGPSGPGTLCNACGLHYNSKHR 144 ******************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.27 | 104 | 139 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-18 | 104 | 155 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 106 | 166 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 108 | 143 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.34E-18 | 109 | 166 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 110 | 135 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.1E-15 | 110 | 144 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:2.130.10.10 | 5.0E-53 | 711 | 728 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 3.0E-8 | 762 | 801 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.3E-47 | 762 | 804 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 5.0E-53 | 762 | 819 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 4.4E-7 | 767 | 800 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 15.187 | 769 | 802 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 16.796 | 769 | 958 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 6.1E-6 | 788 | 802 | IPR020472 | G-protein beta WD-40 repeat |
Gene3D | G3DSA:2.130.10.10 | 5.0E-53 | 867 | 1109 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.0E-8 | 869 | 907 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.3E-47 | 870 | 1056 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 4.6E-7 | 871 | 907 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.385 | 876 | 916 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 894 | 908 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 6.1E-6 | 894 | 908 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 7.4E-9 | 910 | 949 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0012 | 913 | 949 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.781 | 916 | 950 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 6.1E-6 | 936 | 950 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 16 | 951 | 990 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.1 | 1003 | 1043 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1244 aa Download sequence Send to blast |
TAPKLPVHDA VPPATARASP SSGCALPTTG ETEPAPLLVS FSPLVADWVV PRKKRQLVTR 60 RNPTWLPKPE LYEAPPAEPP SAPSRRLEAG GSGNLPVVRR RRNRQRNRSC THCSTTETPQ 120 WREGPSGPGT LCNACGLHYN SKHRLLETYR PTKSPGFDSG KHSNRQSKAA KIMEKKAAAE 180 LLRLTADTAS ARPIGDEFVD VSTKAVHSTR RQGPGSCSGH SRPSHGATEV AAQPVLTRQL 240 CLESRATTRA VRRPSTDGQR LALAAARLYV VGDDGAGEPR RSGQGTLTRR RAGEAATTPS 300 VGDGGADKGV TCGLRSAAVP CSQAVAAACR LCRRVAHRSA TSFATTIQNT RVMSCKNGGD 360 LAAAVDDSHY HERDDHAKIR NMGDADSEEN ESCRDRERFF QCTDGEEPLG VELLEDAGTE 420 FPREEDDEDG DDVRVSFATA VGDRLWEEQA ELDLEVLDEE DEDVSRYDYG MWMATEPMSI 480 QERRRRLLHG MGLTSSWDLL RSRNARMRVP PNIPRSAPLR RPQPAAAFAV ADETTSTAAA 540 APAPAAASPV NGRRPPNASL RRCRSDSRLP VGCGVGRKPQ TFRRSFSLPH SMQGALPDHK 600 ARSPLPSAAL KDDGNGNVSH TRTRSGFKNL DNGKELMLND SQNGVQVSVD ELDRFMGYTP 660 LATQVIRRSQ SQPVSAAANG GANPGPKKRT RWLKNNKLVA SVARLINEKH KDSSTGGVRW 720 PSVATMSKSA SAHPAVSSCG TAGPPERLKV HHYGKASKEL TGLYIRQELR AHEGSIWTMK 780 FSPDARFLAT GGEDRVVRVW RVVDDADSAA AGVAQELGSA SVPPLPADTD GKSEAPGLAA 840 QLSKKLKGRS SKHVLPEHIV VPETVFALAE QPACSFDGHQ DDVLDLSWSK SQQLLSSSMD 900 KTVRLWDMDT QTCLKLFAHN DYVTCVQFNP VDDGYFISGS LDNKVRIWSV PERQVVDWSN 960 LNDMVTAACY TPDGQAAILG SHKGSCRFYK TTDCKLNQEA QIDMSISKKR KSQAKKITGF 1020 QFAPGNPSEI LVTSADSQIR VFNGITVLQK FKGTPATAAN PAPAFPSRGR QTDVTRREPV 1080 ARWHGGAEGG NAWGLVVVTA SRGGEIRVYQ NFGLPLGYRA TGIVPLDGVD EVPDAVAAAI 1140 EQRGQATRMR AKEKSTQVRG HEARGRAAEV TWARGLGDAS EPRRVHRDGR WSLARGQAPP 1200 ASRARGGEGW VRAREKEKDG HARGKARERG GVSGAGARDP RARG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5afu_3 | 3e-15 | 772 | 1007 | 61 | 275 | DYNEIN TAIL |
5afu_4 | 3e-15 | 772 | 1007 | 61 | 275 | DYNEIN TAIL |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008679649.1 | 0.0 | uncharacterized protein LOC103654584 isoform X2 | ||||
TrEMBL | A0A1E5VD14 | 0.0 | A0A1E5VD14_9POAL; WD repeat-containing protein 44 | ||||
STRING | GRMZM2G375856_P01 | 0.0 | (Zea mays) |