PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05118.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 356aa MW: 37689.2 Da PI: 7.6341

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05118.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	33.1	1.3e-10	202	239	18	56
ZF-HD_dimer 18 GghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 Gg DG + + +++al+Ca CgCHRnFHR e Zmw_sc05118.1.g00030.1.am.mk 202 GGDGADGGTTRYRE-RGGLHIDALRCATCGCHRNFHRIE 239 67777776655555.333589****************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.9E-8	203	239	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-4	221	242	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
METGTTGGGD EMRGRHAVVP WRRRHVVVAA SKLWFNPLDP KDRMELNQLL YNPISGDPTE 60 SFSGPDGCMG AGPRVNTLLL CSHNETAVIP VYPAYLPPCP GRSMRLYIAA NGLHHQATAY 120 SASGRVVSRP QTAACKPAAS RSVMDFDEHD DGDDEEMQQP MPVSSSYDTP MQPGLVLGGG 180 GGTPKPEDSR GSASFRTAGP GGGDGADGGT TRYRERGGLH IDALRCATCG CHRNFHRIES 240 GSPTTAEPAA LLSPAAVTAY GVATQHPFST YYRTLTGYLY HHQHQQHLAA AAAGHMQRPL 300 ALPSTSHSGG RDEGDDVSGM IRPTCMVVAP LVGMSLGSGS GGQSGSGMKR FRTKFT

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

METGTTGGGD EMRGRHAVVP WRRRHVVVAA SKLWFNPLDP KDRMELNQLL YNPISGDPTE  60
SFSGPDGCMG AGPRVNTLLL CSHNETAVIP VYPAYLPPCP GRSMRLYIAA NGLHHQATAY  120
SASGRVVSRP QTAACKPAAS RSVMDFDEHD DGDDEEMQQP MPVSSSYDTP MQPGLVLGGG  180
GGTPKPEDSR GSASFRTAGP GGGDGADGGT TRYRERGGLH IDALRCATCG CHRNFHRIES  240
GSPTTAEPAA LLSPAAVTAY GVATQHPFST YYRTLTGYLY HHQHQQHLAA AAAGHMQRPL  300
ALPSTSHSGG RDEGDDVSGM IRPTCMVVAP LVGMSLGSGS GGQSGSGMKR FRTKFT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695882.1	2e-58	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	A2YWA6	9e-43	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	9e-43	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A0E0LW02	2e-54	A0A0E0LW02_ORYPU; Uncharacterized protein
TrEMBL	A0A1D6KLI5	3e-54	A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein
TrEMBL	A0A317YC70	3e-54	A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2
TrEMBL	B6TE62	2e-54	B6TE62_MAIZE; ZF-HD protein dimerisation region containing protein
STRING	OPUNC08G16150.1	3e-55	(Oryza punctata)
STRING	GRMZM2G346920_P01	4e-55	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP48789	2	3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]