PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05116.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 647aa MW: 69049.4 Da PI: 8.2607 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.5 | 8.4e-22 | 129 | 184 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k Zmw_sc05116.1.g00020.1.am.mk 129 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 184 688999***********************************************999 PP | |||||||
2 | START | 61.9 | 1.9e-20 | 486 | 568 | 93 | 164 |
EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE........-TTS--...-TTSEE-EESSEEEEEEEECTCEE CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd........seqkppe..sssvvRaellpSgiliepksnghs 162 +m aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd ++ + p+ ++++ ++llpSg++++++ ng+s Zmw_sc05116.1.g00020.1.am.mk 486 QMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDailrpdgpQRHNHPSggAAGYMGCRLLPSGCIVQDMNNGYS 566 799************************************95554444323333336999********************** PP EE CS START 163 kv 164 kv Zmw_sc05116.1.g00020.1.am.mk 567 KV 568 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-23 | 111 | 187 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-21 | 116 | 186 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.253 | 126 | 186 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-20 | 127 | 190 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-19 | 129 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.78E-20 | 129 | 186 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 161 | 184 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 21.835 | 333 | 568 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-11 | 485 | 568 | No hit | No description |
Pfam | PF01852 | 3.4E-15 | 486 | 568 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MSFGGMFDGS GVFSYDAGGG GSGTHNPGQF TPAPPHIPKP GGGFASPGLS LGLVVLDFLQ 60 TNMEGGQLGD VSRLGLMGSG GSGSLGDGDS LGRSAREDEN DSRSGSDNLD GASGDDLDPD 120 NGNPRQKKKK RYHRHTPQQI QELEAVFKEC PHPDEKQRME LSKRLNLESR QVKFWFQNRR 180 TQMKTQIERH ENALLRQEND KLRADNMTIR EAMRNPMCAS CGGAAVLGEV SLEEQHLRIE 240 NARLKDELDR VCALAAKFLG RPISSGSPVS LLQGCSGLEL GVGTNGFGLG LLGAPSLPPI 300 PDLMGGPVGS SALRLPVGIG GLDAGAMHGG AADGVDRTVL LELGLAAMEE LVKLSQIDEP 360 LWLPGPDGSS GFDTLNLDEY HRAFARVFGP SPAGYVSEAT REAGVAITSS IDLVDSLMDA 420 ISVVAVSLKK KARASTTDII SSGMGGTRSG SIQLVSCLAT SPSRNETLEN SRAISPRNAM 480 MWKRMQMHAE LQVLSPLVPI REVVFLRFCK QHAEGLWAVV DVSVDAILRP DGPQRHNHPS 540 GGAAGYMGCR LLPSGCIVQD MNNGYSKVPA CGGHSARVTR AFSTRRPRST AQYFMLLRVR 600 ACRVVRGGYV CEVVSSPPRP ARSAPWRPAR CARVNAIVAS ARAQTWV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462701.1 | 0.0 | homeobox-leucine zipper protein ROC6 | ||||
Swissprot | Q7Y0V7 | 0.0 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | C5X640 | 0.0 | C5X640_SORBI; Uncharacterized protein | ||||
STRING | Sb02g030470.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |