PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05101.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 30951.4 Da PI: 4.5687

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05101.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.7e-19	87	142	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+++++t+eq+++Le Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa+++ Zmw_sc05101.1.g00050.1.am.mk 87 RTKRRLTAEQVQALEVSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWR 142 77889************98********************************9 PP
2	HD-ZIP_I/II	119.1	2.3e-38	88	179	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 krrl++eqv++LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d+l + +++L Zmw_sc05101.1.g00050.1.am.mk 88 TKRRLTAEQVQALEVSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDELLAGRDALV 168 69**************9999******************************************************* PP HD-ZIP_I/II 82 keveeLreelk 92 +++++Lr+++ Zmw_sc05101.1.g00050.1.am.mk 169 TDNDRLRSQVI 179 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.47E-17	78	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	83	144	IPR001356	Homeobox domain
SMART	SM00389	1.1E-16	85	148	IPR001356	Homeobox domain
CDD	cd00086	1.40E-16	87	145	No hit	No description
Pfam	PF00046	3.8E-16	87	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-19	93	143	IPR009057	Homeodomain-like
PRINTS	PR00031	2.9E-6	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.9E-6	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.0E-14	144	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDSGRLMISS AAAPFCSAGA GGSQVLQFGG GFRGGTSMAA AVAENGRRKR PFFTPHEALQ 60 LELGLDIMDD VDQLCGFEYE LQGAPERTKR RLTAEQVQAL EVSFEEEKRK LEPERKSELA 120 RRLGIAPRQV AVWFQNRRAR WRTKQLEQDF DRLRAAHDEL LAGRDALVTD NDRLRSQVIR 180 LTEKLQAKEP PATQAEEQSA PNPSGPADNT AMQAAAPSSA GSYFAAGAPS PPSSSEGDCG 240 GDEGSALFLP ADAMLLAAVE QGRGLGAEED SWEWFWNSES PLLSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462311.1	2e-82	homeobox-leucine zipper protein HOX25
Swissprot	A3BYC1	2e-68	HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBL	C5XBF6	5e-81	C5XBF6_SORBI; Uncharacterized protein
STRING	Sb02g023650.1	8e-82	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12756	27	35