PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05093.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 240aa MW: 26291.5 Da PI: 7.7814 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.8 | 4.2e-17 | 76 | 127 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr rr+ +NRe+ArrsR+RK+a+++eLe v++L++eN +L k+l e +++ Zmw_sc05093.1.g00050.1.sm.mk 76 TKRIRRMVSNRESARRSRRRKQAQLAELESQVEQLKGENATLFKQLAEANQQ 127 69*****************************************887776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-16 | 71 | 137 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.5E-15 | 75 | 127 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.438 | 75 | 127 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.97E-12 | 77 | 129 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-14 | 77 | 128 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 80 | 95 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MDGSSDDNLW WSGSIRTPEP ESSITAECQR ASVSAASPRG TSSTNHGHES QSDSDSESLI 60 DVEAIPCERR TKSLQTKRIR RMVSNRESAR RSRRRKQAQL AELESQVEQL KGENATLFKQ 120 LAEANQQFTT AVTDNRILKS DVEALRVKVK MAEDMVARSA MSCGLGDLGV APLMNSRKMC 180 QALGMLTVTG LDLLGRDACF RGPTPARQVQ NSPVQSTASL ESIDNRKSSE VTSCAVDMWP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 89 | 96 | RRSRRRKQ |
2 | 91 | 96 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965642.1 | 1e-113 | bZIP transcription factor RISBZ5 | ||||
Swissprot | Q654B3 | 2e-86 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | K3XZ62 | 1e-112 | K3XZ62_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Da00268.1.p | 1e-112 | (Panicum virgatum) | ||||
STRING | Si007043m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2095 | 37 | 96 |
Publications ? help Back to Top | |||
---|---|---|---|
|