PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05090.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 429aa MW: 46638.4 Da PI: 6.1311

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05090.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+e++++a k++G W+ I +++g ++t+ q++s+ qk+ Zmw_sc05090.1.g00020.1.sm.mk 60 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 104 789***************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.43E-16	54	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.056	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	57	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-16	58	107	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-14	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	60	103	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-11	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MEVAVAQVEV EERDGADSSC LRRPLDVVKP PVVADAMQPK ERMDGYPVKV RKPYTITKQR 60 EKWTEEEHEK FLEALKLYGR SWRQIQEHIG TKTAVQIRSH AQKFFSKVVR EPGASNVIEI 120 PPPRPKRKPL HPYPRKCADP STVANLKLAP VSPSSGSDQE NGSPVSVLSA VQSDAFGSSI 180 SNLSTGCTSP VSSDDGNNAR VMVNGEEILP SKQAEIDQSP KEIKQDNSDG DLFEEGSLRE 240 TSLKLFGKTV TIPDPVKVCS SDGGRGEGER CTQSACKEIF EASSIGSATT CAAPTGWVLP 300 YHYFPYHMGE SMDPRISAPL HVWWPYYSFP VSQPRELGAV LHGEGTGESD TGKSPSAESS 360 ADSMGNVQTR TPIDCEVAKE SLGAIQTPDS ALCFELKPSV NSAFVPVKPS NTGSQSTRGF 420 VPCKRCKVE

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MEVAVAQVEV EERDGADSSC LRRPLDVVKP PVVADAMQPK ERMDGYPVKV RKPYTITKQR  60
EKWTEEEHEK FLEALKLYGR SWRQIQEHIG TKTAVQIRSH AQKFFSKVVR EPGASNVIEI  120
PPPRPKRKPL HPYPRKCADP STVANLKLAP VSPSSGSDQE NGSPVSVLSA VQSDAFGSSI  180
SNLSTGCTSP VSSDDGNNAR VMVNGEEILP SKQAEIDQSP KEIKQDNSDG DLFEEGSLRE  240
TSLKLFGKTV TIPDPVKVCS SDGGRGEGER CTQSACKEIF EASSIGSATT CAAPTGWVLP  300
YHYFPYHMGE SMDPRISAPL HVWWPYYSFP VSQPRELGAV LHGEGTGESD TGKSPSAESS  360
ADSMGNVQTR TPIDCEVAKE SLGAIQTPDS ALCFELKPSV NSAFVPVKPS NTGSQSTRGF  420
VPCKRCKVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966527.1	0.0	uncharacterized protein LOC101785788
TrEMBL	A0A3L6S0P2	0.0	A0A3L6S0P2_PANMI; Uncharacterized protein
STRING	Si006457m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47