PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05084.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 286aa MW: 31616.6 Da PI: 4.7697

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05084.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.7e-19	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le++F +++++ e+++++A+ l L rqV vWFqNrRa++k Zmw_sc05084.1.g00020.1.am.mk 67 KKRRLAADQVRALERCFDADNKLDPERKARIARDLLLHPRQVAVWFQNRRARWK 120 4557899**********************************************9 PP
2	HD-ZIP_I/II	123.7	8.9e-40	66	158	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+++qv++LE++F++++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L+ Zmw_sc05084.1.g00020.1.am.mk 66 EKKRRLAADQVRALERCFDADNKLDPERKARIARDLLLHPRQVAVWFQNRRARWKTKQIERDFNALRARHDALRHECDELR 146 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L++e++e Zmw_sc05084.1.g00020.1.am.mk 147 RDKDALAAEIRE 158 *****99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.694	62	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	63	124	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-17	65	126	IPR001356	Homeobox domain
CDD	cd00086	1.23E-14	67	123	No hit	No description
Pfam	PF00046	4.5E-16	67	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-18	73	121	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.5E-14	122	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKRPSCRGFS SVASQEAQEQ QEDSSRSMEQ GLDVHAKRDD AVAGAYDEEE EEDEDELVGG 60 RGGLGEKKRR LAADQVRALE RCFDADNKLD PERKARIARD LLLHPRQVAV WFQNRRARWK 120 TKQIERDFNA LRARHDALRH ECDELRRDKD ALAAEIRELR EKVEKQMSVK LESAEDRLLP 180 GSVAAATAVH KDGSTDSDSS AVFNEEASPY SGGAAFDHHP SFTGFTSSFL APSSTLSSSF 240 PFMYSGGPHL DQEADGFLGA VATADSFFAA EEQGTGLGSW YGGEGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704164.1	1e-121	homeobox-leucine zipper protein HOX8 isoform X1
Swissprot	Q338Z7	2e-88	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A0A9JEK4	1e-128	A0A0A9JEK4_ARUDO; Uncharacterized protein
STRING	Pavir.J35191.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]