PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05033.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 757aa MW: 81368.5 Da PI: 10.5653

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05033.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.7	1.7e-31	566	623	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsY+rCt+++Cpvkk+vers dp vv++tYeg+H+h+ Zmw_sc05033.1.g00010.1.am.mk 566 EDGYRWRKYGQKAVKNSPYPRSYHRCTTQRCPVKKRVERSYLDPAVVITTYEGKHTHP 623 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-32	551	625	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-27	557	625	IPR003657	WRKY domain
PROSITE profile	PS50811	31.605	560	625	IPR003657	WRKY domain
SMART	SM00774	2.2E-37	565	624	IPR003657	WRKY domain
Pfam	PF03106	3.6E-24	566	623	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
QSDAMAPVSG DGLGGVEQVR PHPPGIFAID HDRGRLDFSG VPGAQASSQT TSSTRKDGLL 60 PPPTMIDVRR RGSTRVEHVN GWTVDHRGPA VPGVAVPGWP GLFHQTLWRS PRLTIPVSCA 120 LNSRAPRGPG HRRSRPSCDP SCACPRSGTG TYREATLALY LFQTGRWVAR VEELAGWLAA 180 LSRARSRWRK ERQEPFPDAP GPRPGRAAAR EGWCVTIYVW KPRRVPLARS LDRTVDGLMD 240 RLFWLGTHIL FSLGASGRGA RSPSQTPART YHRQHQRPSA RDRTGQRPGM RHPRVTAGGQ 300 FDHGARLDLE RPAASRGAPL THHHRHGTPR GTVHRARLSE LARGSSKHTS TPRAMSSPGE 360 YLYYYDELAS LFAQPTSDTM QQRQEASCFP DFLLAGPPTA TRFQQLQSPT SDVMQHLLAG 420 MPMGDYDPLF GALDLPVAAA DDVVKRELVV DTTSGGGSRT PSTAPVTPNA TSSMSSSSSE 480 AAGGGRGGFG AGGFGAAKED SPAGRCKKEE GDGEDSNVSG KGDQEDGDKC KRGAGSAAKA 540 KGKGGEKRQQ QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYHR CTTQRCPVKK 600 RVERSYLDPA VVITTYEGKH THPIPAALRG STHLLAAQAA HGLHHHQFGS LAPMPHTMGA 660 AAPFGRTGGG GGIDMLGLLQ PRGASHRAML PTTMTHASSH GLAAGPVSSS VAMSAATTTT 720 SSAPSPSSLQ MQHMMAQDLG FLQDMMMPSF VHSNVQP

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

QSDAMAPVSG DGLGGVEQVR PHPPGIFAID HDRGRLDFSG VPGAQASSQT TSSTRKDGLL  60
PPPTMIDVRR RGSTRVEHVN GWTVDHRGPA VPGVAVPGWP GLFHQTLWRS PRLTIPVSCA  120
LNSRAPRGPG HRRSRPSCDP SCACPRSGTG TYREATLALY LFQTGRWVAR VEELAGWLAA  180
LSRARSRWRK ERQEPFPDAP GPRPGRAAAR EGWCVTIYVW KPRRVPLARS LDRTVDGLMD  240
RLFWLGTHIL FSLGASGRGA RSPSQTPART YHRQHQRPSA RDRTGQRPGM RHPRVTAGGQ  300
FDHGARLDLE RPAASRGAPL THHHRHGTPR GTVHRARLSE LARGSSKHTS TPRAMSSPGE  360
YLYYYDELAS LFAQPTSDTM QQRQEASCFP DFLLAGPPTA TRFQQLQSPT SDVMQHLLAG  420
MPMGDYDPLF GALDLPVAAA DDVVKRELVV DTTSGGGSRT PSTAPVTPNA TSSMSSSSSE  480
AAGGGRGGFG AGGFGAAKED SPAGRCKKEE GDGEDSNVSG KGDQEDGDKC KRGAGSAAKA  540
KGKGGEKRQQ QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYHR CTTQRCPVKK  600
RVERSYLDPA VVITTYEGKH THPIPAALRG STHLLAAQAA HGLHHHQFGS LAPMPHTMGA  660
AAPFGRTGGG GGIDMLGLLQ PRGASHRAML PTTMTHASSH GLAAGPVSSS VAMSAATTTT  720
SSAPSPSSLQ MQHMMAQDLG FLQDMMMPSF VHSNVQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	556	626	8	78	Probable WRKY transcription factor 4
2lex_A	3e-26	556	626	8	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001169830.1	1e-100	uncharacterized protein LOC100383722
TrEMBL	C0PIJ7	5e-99	C0PIJ7_MAIZE; Putative WRKY transcription factor 71
STRING	GRMZM2G151763_P01	1e-100	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173