PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05023.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 399aa MW: 42316.5 Da PI: 8.5725

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05023.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	141.2	8.1e-44	106	259	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s a Zmw_sc05023.1.g00050.1.sm.mk 106 PAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGA 186 689***************************************************************9999999999999 PP TCP 83 snsssg.kaaksaakskksqksaasalnlakesr....................akarararertrekmrikn 134 s++s++ +aa++ ++ +++q++ as+l +++ + a + +r+r+r++++ ++++ Zmw_sc05023.1.g00050.1.sm.mk 187 SHHSAAsRAATAFHHLQPQQHDVASMLGWNHHYQqqqqllqppppqqqapqdpgAGEFMRKRYREADDLFKDT 259 98888845566666*************99888788999999999999999888888888888888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-38	111	254	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.349	111	165	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDHGAAPSSS TSTSTNSSRS ASEQQQQHHH HQHQQAHQQV QHHAFYYAAA AQGGAANAAA 60 AVGMAPFMGS LSIVPAAAAA GEAQAAQQVA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG 120 RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV 180 SLRSGASHHS AASRAATAFH HLQPQQHDVA SMLGWNHHYQ QQQQLLQPPP PQQQAPQDPG 240 AGEFMRKRYR EADDLFKDTA ARQQQQQQPD GADEPEEQKA RALPTAMWAV APNSSAAGGA 300 FWMQPAWAFG GGGPAAAGTV QAPLQFMSTR SGGDFPGGHM ADNSIGMLAA LNTSVQHQHQ 360 HQQDEQPQQQ QPKSTMAQQQ RHRAGANGGN AGHGAASPQ

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDHGAAPSSS TSTSTNSSRS ASEQQQQHHH HQHQQAHQQV QHHAFYYAAA AQGGAANAAA  60
AVGMAPFMGS LSIVPAAAAA GEAQAAQQVA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG  120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV  180
SLRSGASHHS AASRAATAFH HLQPQQHDVA SMLGWNHHYQ QQQQLLQPPP PQQQAPQDPG  240
AGEFMRKRYR EADDLFKDTA ARQQQQQQPD GADEPEEQKA RALPTAMWAV APNSSAAGGA  300
FWMQPAWAFG GGGPAAAGTV QAPLQFMSTR SGGDFPGGHM ADNSIGMLAA LNTSVQHQHQ  360
HQQDEQPQQQ QPKSTMAQQQ RHRAGANGGN AGHGAASPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978832.1	1e-117	transcription factor PCF3
Swissprot	Q53PH2	1e-95	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A0A9G9I1	1e-123	A0A0A9G9I1_ARUDO; Uncharacterized protein
STRING	GRMZM2G003944_P01	1e-120	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52