PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05015.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 260aa MW: 28134.8 Da PI: 9.3128 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 86.4 | 7.7e-27 | 22 | 142 | 6 | 121 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....lleelkvee 79 eq+Cyv+Cn+C+tilav vP +slfk+v+vrCGhC++llsvnl+ l+a ++l +++l + ll+++ Zmw_sc05015.1.g00030.1.sm.mk 22 EQEQLCYVHCNYCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRSLL--LPAANQLpfGQALLSPtsphgLLDDMPPFA 100 679***************************************9987654..555554411333333345558999999999 PP YABBY 80 enlksnvekeesastsvsseklsenedeevprvppvirPPek 121 + s ++e++as +vs+ + s+n+ ++ + ++ PP k Zmw_sc05015.1.g00030.1.sm.mk 101 APTPSLLSAEQAASPTVSTITSSNNSYGNSMSAMSINAPPPK 142 999999999999999988888888888777778888888877 PP | |||||||
2 | YABBY | 120.3 | 3e-37 | 172 | 245 | 94 | 170 |
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++++ ++ ++p v+++ r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl Zmw_sc05015.1.g00030.1.sm.mk 172 QKAQNFT---VDSSQLPTVKHAHRATEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 245 3333333...3345567777899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.2E-63 | 22 | 245 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-7 | 188 | 238 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-4 | 197 | 237 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.86E-5 | 199 | 235 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSSVPETFAT DPHLVQPPAA AEQEQLCYVH CNYCDTILAV GVPCSSLFKT VAVRCGHCAN 60 LLSVNLRSLL LPAANQLPFG QALLSPTSPH GLLDDMPPFA APTPSLLSAE QAASPTVSTI 120 TSSNNSYGNS MSAMSINAPP PKSASPEPQQ QQPKSASSGN RKSFGWSRLK SQKAQNFTVD 180 SSQLPTVKHA HRATEKRQRV PSAYNRFIKD EIQRIKASNP DITHREAFSA AAKNWAHFPH 240 IHFGLMPDQG LKKTSIQNQV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-107 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-103 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-103 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A0A9NXW5 | 1e-110 | A0A0A9NXW5_ARUDO; ZYB14 | ||||
STRING | Si010859m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Publications ? help Back to Top | |||
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